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GLI1 GLI family zinc finger 1 [ Ovis aries (sheep) ]

Gene ID: 101120651, updated on 8-Mar-2024

Summary

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Gene symbol
GLI1
Gene description
GLI family zinc finger 1
See related
EnsemblRapid:ENSOARG00020001339
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 3 NC_056056.1 (162170536..162181210, complement)

Chromosome 3 - NC_056056.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 2 Neighboring gene methyl-CpG binding domain protein 6 Neighboring gene DDIT3 upstream open reading frame protein Neighboring gene DNA damage inducible transcript 3 Neighboring gene methionyl-tRNA synthetase 1 Neighboring gene Rho GTPase activating protein 9 Neighboring gene inhibin subunit beta E Neighboring gene inhibin subunit beta C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056056.1 Chromosome 3 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GLI1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056056.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    162170536..162181210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042247007.2 → XP_042102941.1  zinc finger protein GLI1 isoform X1

    UniProtKB/TrEMBL
    W5P9N8
    Related
    ENSOARP00020001715.1, ENSOART00020002061.2
    Conserved Domains (6) summary
    PHA03247
    Location:402 → 796
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:84 → 364
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:297 → 387
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 325
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:674 → 968
    Atrophin-1; Atrophin-1 family
    pfam16159
    Location:237 → 265
    FOXP-CC; FOXP coiled-coil domain

  2. XM_042247008.2 → XP_042102942.1  zinc finger protein GLI1 isoform X1

    UniProtKB/TrEMBL
    W5P9N8
    Related
    ENSOARP00020001728.1, ENSOART00020002075.2
    Conserved Domains (6) summary
    PHA03247
    Location:402 → 796
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:84 → 364
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:297 → 387
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 325
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:674 → 968
    Atrophin-1; Atrophin-1 family
    pfam16159
    Location:237 → 265
    FOXP-CC; FOXP coiled-coil domain

  3. XM_042247010.2 → XP_042102944.1  zinc finger protein GLI1 isoform X3

    UniProtKB/TrEMBL
    W5P9N8
    Conserved Domains (4) summary
    PHA03247
    Location:356 → 750
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:38 → 318
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:251 → 341
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:257 → 279
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_042247009.2 → XP_042102943.1  zinc finger protein GLI1 isoform X2

    UniProtKB/TrEMBL
    W5P9N8
    Conserved Domains (4) summary
    PHA03247
    Location:359 → 753
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:41 → 321
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:254 → 344
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:260 → 282
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_042247005.2 → XP_042102939.1  zinc finger protein GLI1 isoform X1

    UniProtKB/TrEMBL
    W5P9N8
    Conserved Domains (6) summary
    PHA03247
    Location:402 → 796
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:84 → 364
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:297 → 387
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 325
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:674 → 968
    Atrophin-1; Atrophin-1 family
    pfam16159
    Location:237 → 265
    FOXP-CC; FOXP coiled-coil domain

  6. XM_042247004.2 → XP_042102938.1  zinc finger protein GLI1 isoform X1

    UniProtKB/TrEMBL
    W5P9N8
    Conserved Domains (6) summary
    PHA03247
    Location:402 → 796
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:84 → 364
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:297 → 387
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 325
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:674 → 968
    Atrophin-1; Atrophin-1 family
    pfam16159
    Location:237 → 265
    FOXP-CC; FOXP coiled-coil domain

  7. XM_027967529.3 → XP_027823330.1  zinc finger protein GLI1 isoform X1

    UniProtKB/TrEMBL
    W5P9N8
    Conserved Domains (6) summary
    PHA03247
    Location:402 → 796
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:84 → 364
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:297 → 387
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 325
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:674 → 968
    Atrophin-1; Atrophin-1 family
    pfam16159
    Location:237 → 265
    FOXP-CC; FOXP coiled-coil domain
Nucleotide Protein Strain
Heading Accession and Version

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