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znf536 zinc finger protein 536 [ Takifugu rubripes (torafugu) ]

Gene ID: 101072788, updated on 8-Mar-2024

Summary

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Gene symbol
znf536
Gene description
zinc finger protein 536
See related
Ensembl:ENSTRUG00000005430
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See znf536 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 13 NC_042297.1 (2002294..2139293)
101 previous assembly FUGU5 (GCF_000180615.1) 13 NC_018902.1 (117016..248235)

Chromosome 13 - NC_042297.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105417220 Neighboring gene uncharacterized LOC115252224 Neighboring gene uncharacterized LOC115252002 Neighboring gene teashirt zinc finger homeobox 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 536

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042297.1 Reference fTakRub1.2 Primary Assembly

    Range
    2002294..2139293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029845980.1 → XP_029701840.1  zinc finger protein 536 isoform X2

    UniProtKB/TrEMBL
    A0A674MKU5, H2SKU4
    Related
    ENSTRUP00000062112.1, ENSTRUT00000083685.1

  2. XM_029845975.1 → XP_029701835.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4

  3. XM_029845976.1 → XP_029701836.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4

  4. XM_029845971.1 → XP_029701831.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain

  5. XM_029845978.1 → XP_029701838.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4

  6. XM_029845977.1 → XP_029701837.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4

  7. XM_029845972.1 → XP_029701832.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain

  8. XM_011609518.2 → XP_011607820.2  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain

  9. XM_029845973.1 → XP_029701833.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain

  10. XM_029845974.1 → XP_029701834.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain

  11. XM_029845979.1 → XP_029701839.1  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Related
    ENSTRUP00000059165.1, ENSTRUT00000076609.1
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain

  12. XM_003969405.3 → XP_003969454.2  zinc finger protein 536 isoform X1

    UniProtKB/TrEMBL
    A0A674MDP4, H2SKU4
    Conserved Domains (6) summary
    COG5048
    Location:118 → 184
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:793 → 813
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16606
    Location:695 → 773
    zf-C2H2_assoc; Unstructured conserved, between two C2H2-type zinc-fingers
    pfam00096
    Location:793 → 813
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:805 → 827
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:819 → 842
    zf-H2C2_5; C2H2-type zinc-finger domain
Nucleotide Protein
Heading Accession and Version

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