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prdm9 PR domain containing 9 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100709898, updated on 8-Mar-2024

Summary

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Gene symbol
prdm9
Gene description
PR domain containing 9
See related
Ensembl:ENSONIG00000007967
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 17.3), blood (RPKM 3.1) and 7 other tissues See more
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
9
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (7605708..7611968, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (2263479..2269764)

Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene sarcoglycan, alpha Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene F-box and WD repeat domain containing 10 Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 3A1 Neighboring gene protoheme IX farnesyltransferase, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase PRDM9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    7605708..7611968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005458180.3 → XP_005458237.1  histone-lysine N-methyltransferase PRDM9

    See identical proteins and their annotated locations for XP_005458237.1

    UniProtKB/TrEMBL
    I3JME1
    Conserved Domains (4) summary
    smart00317
    Location:110 → 218
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:402 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:770 → 790
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:783 → 807
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005458181.4 → XP_005458238.1  histone-lysine N-methyltransferase PRDM9

    See identical proteins and their annotated locations for XP_005458238.1

    UniProtKB/TrEMBL
    I3JME1
    Conserved Domains (4) summary
    smart00317
    Location:110 → 218
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:402 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:770 → 790
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:783 → 807
    zf-H2C2_2; Zinc-finger double domain

  3. XM_013276434.3 → XP_013131888.1  histone-lysine N-methyltransferase PRDM9

    UniProtKB/TrEMBL
    I3JME1
    Conserved Domains (4) summary
    smart00317
    Location:110 → 218
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:402 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:770 → 790
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:783 → 807
    zf-H2C2_2; Zinc-finger double domain

  4. XM_005458179.4 → XP_005458236.1  histone-lysine N-methyltransferase PRDM9

    See identical proteins and their annotated locations for XP_005458236.1

    UniProtKB/TrEMBL
    I3JME1
    Related
    ENSONIP00000010035.1, ENSONIT00000010044.2
    Conserved Domains (4) summary
    smart00317
    Location:110 → 218
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:402 → 816
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:770 → 790
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:783 → 807
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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