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mecom MDS1 and EVI1 complex locus [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100699103, updated on 8-Mar-2024

Summary

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Gene symbol
mecom
Gene description
MDS1 and EVI1 complex locus
See related
Ensembl:ENSONIG00000005587
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in eye (RPKM 5.1), whole embryo (RPKM 4.5) and 6 other tissues See more
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG14
Exon count:
18
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG14 NC_031979.2 (12818865..12944019, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG14 NC_031979.1 (27576927..27702075)

Linkage Group LG14 - NC_031979.2Genomic Context describing neighboring genes Neighboring gene mitochondrial fission factor a Neighboring gene multiple EGF like domains 6 Neighboring gene EH domain-containing protein 2 Neighboring gene sodium channel subunit beta-4 Neighboring gene sodium channel, voltage-gated, type II, beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: MDS1 and EVI1 complex locus protein
Names
MDS1 and EVI1 complex locus protein EVI1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031979.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    12818865..12944019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005474502.4 → XP_005474559.1  LOW QUALITY PROTEIN: MDS1 and EVI1 complex locus protein

    UniProtKB/TrEMBL
    A0A669CHJ5
    Related
    ENSONIP00000007027.2, ENSONIT00000007032.2
    Conserved Domains (6) summary
    smart00317
    Location:83 → 191
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:939 → 1066
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:939 → 959
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:937 → 959
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:951 → 975
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:356 → 438
    zf-C2H2_8; C2H2-type zinc ribbon
Nucleotide Protein
Heading Accession and Version

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