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ZNF10 zinc finger protein 10 [ Sus scrofa (pig) ]

Gene ID: 100627773, updated on 8-Mar-2024

Summary

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Official Symbol
ZNF10provided by VGNC
Official Full Name
zinc finger protein 10provided by VGNC
Primary source
VGNC:VGNC:111444
See related
Ensembl:ENSSSCG00000033616
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 3.1), kidney (RPKM 1.8) and 8 other tissues See more
Orthologs
human all
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Genomic context

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Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (22477507..22502646, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538997.1 (8740..17381, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding domain protein 3-like 1 Neighboring gene anomalous homeobox protein-like Neighboring gene zinc finger protein 891 Neighboring gene zinc finger protein 140

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    22477507..22502646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072890.1 → XP_020928549.1  zinc finger protein 10 isoform X2

    UniProtKB/TrEMBL
    A0A480RL40, A0A8D1S7X4, A0A8D1XSC4
    Related
    ENSSSCP00000042690.2, ENSSSCT00000065784.3
    Conserved Domains (3) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:236 → 472
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:433 → 453
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_005658537.3 → XP_005658594.1  zinc finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A480JR49
    Conserved Domains (6) summary
    smart00349
    Location:17 → 76
    KRAB; krueppel associated box
    COG5048
    Location:239 → 475
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:436 → 456
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:434 → 456
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:17 → 56
    KRAB; KRAB box
    pfam13465
    Location:365 → 389
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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