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DDX55 DEAD-box helicase 55 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100472570, updated on 8-Mar-2024

Summary

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Gene symbol
DDX55
Gene description
DEAD-box helicase 55
Locus tag
PANDA_000939
See related
Ensembl:ENSAMEG00000015274
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 12 NC_048229.1 (5702863..5716866, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217304.1 (3173164..3187997)

Chromosome 12 - NC_048229.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117795117 Neighboring gene tectonic family member 2 Neighboring gene general transcription factor IIH subunit 3 Neighboring gene eukaryotic translation initiation factor 2B subunit alpha Neighboring gene transmembrane p24 trafficking protein 2 Neighboring gene 40S ribosomal protein S24-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048229.1 Reference ASM200744v2 Primary Assembly

    Range
    5702863..5716866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002913099.4 → XP_002913145.1  ATP-dependent RNA helicase DDX55

    See identical proteins and their annotated locations for XP_002913145.1

    UniProtKB/TrEMBL
    A0A7N5P102, D2GW00
    Related
    ENSAMEP00000025001.1, ENSAMET00000035710.1
    Conserved Domains (4) summary
    COG0513
    Location:2 → 517
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00268
    Location:9 → 224
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:252 → 363
    Helicase_C; Helicase conserved C-terminal domain
    pfam13959
    Location:405 → 462
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
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