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NOCT nocturnin [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100449251, updated on 3-Apr-2024

Summary

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Gene symbol
NOCT
Gene description
nocturnin
Locus tag
CR201_G0000225
See related
Ensembl:ENSPPYG00000033593
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 3 NC_071988.2 (160921181..160953439)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 4 NC_071989.1 (160958461..160988639)

Chromosome 3 - NC_071988.2Genomic Context describing neighboring genes Neighboring gene armadillo repeat-containing protein 1-like Neighboring gene uncharacterized LOC129058869 Neighboring gene U6 spliceosomal RNA Neighboring gene E74 like ETS transcription factor 2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nocturnin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071988.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    160921181..160953439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002815154.6 → XP_002815200.1  nocturnin isoform X1

    UniProtKB/TrEMBL
    A0A6D2XW40, A0A8I5TT32
    Related
    ENSPPYP00000040828.1
    Conserved Domains (1) summary
    cd09096
    Location:144 → 423
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

  2. XM_054553541.2 → XP_054409516.1  nocturnin isoform X2

  3. XM_054553542.2 → XP_054409517.1  nocturnin isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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