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Noct nocturnin [ Mus musculus (house mouse) ]

Gene ID: 12457, updated on 27-Jan-2018
Official Symbol
Noctprovided by MGI
Official Full Name
nocturninprovided by MGI
Primary source
MGI:MGI:109382
See related
Ensembl:ENSMUSG00000023087 Vega:OTTMUSG00000027519
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ccr4; Ccrn4l; AU043840
Expression
Ubiquitous expression in placenta adult (RPKM 54.9), colon adult (RPKM 24.9) and 28 other tissues See more
Orthologs
See Noct in Genome Data Viewer
Location:
3; 3 C
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (51224447..51251654)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (51028369..51055576)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35891 Neighboring gene predicted gene, 40044 Neighboring gene RIKEN cDNA 4930577N17 gene Neighboring gene E74-like factor 2 Neighboring gene nuclear encoded tRNA proline 7 (anticodon TGG)

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
exonuclease activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
poly(A)-specific ribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
poly(A)-specific ribonuclease activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
circadian regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
circadian rhythm IEA
Inferred from Electronic Annotation
more info
 
circadian rhythm IEP
Inferred from Expression Pattern
more info
PubMed 
cytoplasmic mRNA processing body assembly IGI
Inferred from Genetic Interaction
more info
PubMed 
deadenylation-dependent decapping of nuclear-transcribed mRNA IGI
Inferred from Genetic Interaction
more info
PubMed 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of osteoblast differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of fat cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to extracellular stimulus IDA
Inferred from Direct Assay
more info
PubMed 
response to lipopolysaccharide IDA
Inferred from Direct Assay
more info
PubMed 
rhythmic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
P-body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
nocturnin
Names
CCR4 carbon catabolite repression 4-like
CCR4 protein homolog
carbon catabolite repression 4 homolog
carbon catabolite repression 4-like protein
circadian deadenylase NOC
NP_033964.1
XP_006501019.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009834.2NP_033964.1  nocturnin

    See identical proteins and their annotated locations for NP_033964.1

    Status: VALIDATED

    Source sequence(s)
    AK084516, AK087790, BB261546
    Consensus CDS
    CCDS17336.1
    UniProtKB/Swiss-Prot
    O35710
    UniProtKB/TrEMBL
    B2RTJ8
    Related
    ENSMUSP00000023849.8, OTTMUSP00000034381, ENSMUST00000023849.14, OTTMUST00000068124
    Conserved Domains (1) summary
    cd09096
    Location:142421
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    51224447..51251654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500956.1XP_006501019.1  nocturnin isoform X1

    Conserved Domains (1) summary
    cd09096
    Location:85364
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains
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