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CTDSP2 CTD small phosphatase 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100409877, updated on 8-Mar-2024

Summary

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Gene symbol
CTDSP2
Gene description
CTD small phosphatase 2
See related
Ensembl:ENSCJAG00000006503
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CTDSP2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (58296661..58322331)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (59419385..59445056)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103795276 Neighboring gene uncharacterized LOC118144492 Neighboring gene U6 spliceosomal RNA Neighboring gene advillin Neighboring gene EEF1A lysine methyltransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    58296661..58322331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009004125.4 → XP_009002373.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1

    See identical proteins and their annotated locations for XP_009002373.1

    UniProtKB/TrEMBL
    F7GTN6, U3EZW8
    Conserved Domains (1) summary
    TIGR02251
    Location:107 → 266
    HIF-SF_euk; Dullard-like phosphatase domain

  2. XM_002752673.6 → XP_002752719.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X2

    See identical proteins and their annotated locations for XP_002752719.1

    UniProtKB/TrEMBL
    U3FST0
    Related
    ENSCJAP00000012059.2
    Conserved Domains (1) summary
    TIGR02251
    Location:101 → 260
    HIF-SF_euk; Dullard-like phosphatase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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