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Taxonomy browser (Callithrix jacchus)

Callithrix jacchus

Taxonomy ID: 9483 (for references in articles please use NCBI:txid9483)
Scientific name: Callithrix jacchus
homotypic synonym: Callithrix jacchus jacchus
Genbank common name: white-tufted-ear marmoset
Inherited blast name: primates
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name: common marmoset
common name: white ear-tufted marmoset
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
   Entrez records   
Database name Direct links
Nucleotide 296,717
Nucleotide EST 292,992
Nucleotide GSS 152,518
Protein 98,920
Structure 2
Genome 1
Popset 144
GEO Datasets 156
PubMed Central 2,144
Gene 50,018
SRA Experiments 621
Identical Protein Groups 49,212
Bio Project 46
Bio Sample 470
Bio Systems 496
Assembly 4
Clone DB 769,180
Probe 9
PubChem BioAssay 271
Taxonomy 1

Comments and References:

Mittermeier, R. A., A. B. Rylands, A. F. Coimbra-Filho, and G. A. B. da Foneseca (eds.). 1988. Ecology and behavior of Neotropical Primates. World Wildlife Fund, Washington D. C., 2:1-610.


Genome Information

Go to NCBI genomic BLAST page for Callithrix jacchus
Genome view: 24 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND FINISHING PCR PRIMERWALK SHOTGUN WGS ALL
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
- 626 - - - - - 626
BCM - Baylor College of Medicine
- - - - - - 11,416,033 11,416,033
IMBGA - Institute of Molecular Biotechnology Genome Analysis
- - - - - 1,397 - 1,397
NISC - NIH Intramural Sequencing Center
- - - - - 1,260,768 - 1,260,768
WUGSC - Washington University, Genome Sequencing Center
3,837 1,324,114 188 2,218 10,813 762,133 14,199,056 16,302,359
Totals per type
3,837 1,324,740 188 2,218 10,813 2,024,298 25,615,089 28,981,183

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Callithrix jacchus taxonomy/phylogenetic Animal Diversity Web
2 records from this provider taxonomy/phylogenetic AnimalBase
Callithrix jacchus taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Callithrix jacchus taxonomy/phylogenetic Barcodes of Life
Callithrix jacchus taxonomy/phylogenetic CalPhotos
CCR culture/stock collections Coriell Cell Repositories
dryaddb supplemental materials Dryad Digital Repository
Callithrix jacchus (Linnaeus, 1758) taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Callithrix jacchus (Linnaeus, 1758) taxonomy/phylogenetic Integrated Taxonomic Information System
Callithrix jacchus Linnaeus 1758 taxonomy/phylogenetic Mammal Species of the World
marmoset (BAC proposal) taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Primate Fact Sheets
Callithrix jacchus taxonomy/phylogenetic TreeBase
WebScipio: Callithrix jacchus organism-specific WebScipio - eukaryotic gene identification
2 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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