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FOXP4 forkhead box P4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100404015, updated on 6-Jun-2024

Summary

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Gene symbol
FOXP4
Gene description
forkhead box P4
See related
Ensembl:ENSCJAG00000004180
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See FOXP4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (46161509..46213982)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (46719576..46772048)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128931762 Neighboring gene uncharacterized LOC118152859 Neighboring gene MyoD family inhibitor Neighboring gene transcription factor EB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein P4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    46161509..46213982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035295590.2 → XP_035151481.1  forkhead box protein P4 isoform X1

    UniProtKB/TrEMBL
    F6XVP9, U3BJ39, U3EF16
    Conserved Domains (3) summary
    COG5025
    Location:364 → 559
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:466 → 552
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  2. XM_035295595.2 → XP_035151486.1  forkhead box protein P4 isoform X4

    UniProtKB/TrEMBL
    F6PQU6, U3BHK8, U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:426 → 606
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:455 → 541
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  3. XM_035295593.2 → XP_035151484.1  forkhead box protein P4 isoform X2

    UniProtKB/TrEMBL
    U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:363 → 558
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:302 → 369
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:465 → 551
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  4. XM_035295596.2 → XP_035151487.1  forkhead box protein P4 isoform X5

    UniProtKB/TrEMBL
    U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:425 → 605
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:302 → 369
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:454 → 540
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  5. XM_035295594.2 → XP_035151485.1  forkhead box protein P4 isoform X3

    UniProtKB/TrEMBL
    U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:362 → 557
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:301 → 368
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:464 → 550
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  6. XM_035295597.2 → XP_035151488.1  forkhead box protein P4 isoform X6

    Conserved Domains (3) summary
    COG5025
    Location:347 → 542
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:286 → 353
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:449 → 535
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  7. XM_035295598.2 → XP_035151489.1  forkhead box protein P4 isoform X7

    UniProtKB/TrEMBL
    U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:345 → 540
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:284 → 351
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:447 → 533
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  8. XM_035295599.2 → XP_035151490.1  forkhead box protein P4 isoform X8

    UniProtKB/TrEMBL
    U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:332 → 527
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:271 → 338
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:434 → 520
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  9. XM_054253974.1 → XP_054109949.1  forkhead box protein P4 isoform X9

    UniProtKB/TrEMBL
    U3BJ39

  10. XM_035295591.2 → XP_035151482.1  forkhead box protein P4 isoform X1

    UniProtKB/TrEMBL
    F6XVP9, U3BJ39, U3EF16
    Conserved Domains (3) summary
    COG5025
    Location:364 → 559
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:466 → 552
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  11. XM_035295600.2 → XP_035151491.1  forkhead box protein P4 isoform X10

    UniProtKB/TrEMBL
    U3BJ39
    Conserved Domains (3) summary
    COG5025
    Location:258 → 453
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:197 → 264
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:360 → 446
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins
Nucleotide Protein
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