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CNTFR ciliary neurotrophic factor receptor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394434, updated on 6-Jun-2024

Summary

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Gene symbol
CNTFR
Gene description
ciliary neurotrophic factor receptor
See related
Ensembl:ENSCJAG00000008660
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (138449831..138490615, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (139692494..139753118, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene uncharacterized LOC118155390 Neighboring gene uncharacterized LOC118155394 Neighboring gene energy homeostasis associated Neighboring gene uncharacterized LOC118142893 Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene dynactin subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ciliary neurotrophic factor receptor subunit alpha
Names
ciliary neurotrophic factor receptor subunit alpha preproprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    138449831..138490615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035308547.2 → XP_035164438.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A5F4W567, A0A5K1V3T2
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  2. XM_035308622.2 → XP_035164513.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A5F4W567, A0A5K1V3T2
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  3. XM_035308592.2 → XP_035164483.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  4. XM_035308562.2 → XP_035164453.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  5. XM_035308577.2 → XP_035164468.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  6. XM_054257235.1 → XP_054113210.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567

  7. XM_035308571.2 → XP_035164462.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  8. XM_035308536.1 → XP_035164427.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  9. XM_035308557.2 → XP_035164448.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  10. XM_035308597.2 → XP_035164488.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A5F4W567
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]
Nucleotide Protein
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