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pogz pogo transposable element derived with ZNF domain [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100158529, updated on 17-Aug-2024

Summary

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Official Symbol
pogzprovided by Xenbase
Official Full Name
pogo transposable element derived with ZNF domainprovided by Xenbase
Primary source
Xenbase:XB-GENE-6257670
See related
Ensembl:ENSXETG00000020724
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
suhw5; znf635; znf280e; znf635m
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (144796804..144813430)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683558.1 (93014..112374, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene tuftelin 1 Neighboring gene cingulin Neighboring gene proteasome subunit beta 4 Neighboring gene selenium binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pogo transposable element with ZNF domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    144796804..144813430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031890758.1 → XP_031746618.1  pogo transposable element with ZNF domain isoform X1

    UniProtKB/TrEMBL
    A0A8J1IPE7, F7D5L6
    Conserved Domains (6) summary
    smart00674
    Location:987 → 1049
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:531 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:495 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:938 → 975
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1124 → 1237
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_031890762.1 → XP_031746622.1  pogo transposable element with ZNF domain isoform X3

    UniProtKB/TrEMBL
    A0A8J1IM77, F7D5L6
    Conserved Domains (6) summary
    smart00674
    Location:986 → 1048
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:531 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:495 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:937 → 974
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1123 → 1236
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_031890759.1 → XP_031746619.1  pogo transposable element with ZNF domain isoform X2

    UniProtKB/TrEMBL
    A0A8J1IPE7, F7D5L6
    Related
    ENSXETP00000106257.1, ENSXETT00000109895.1
    Conserved Domains (6) summary
    smart00674
    Location:987 → 1049
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:531 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:495 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:938 → 975
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1124 → 1237
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_031890760.1 → XP_031746620.1  pogo transposable element with ZNF domain isoform X1

    UniProtKB/TrEMBL
    A0A8J1IPE7, F7D5L6
    Conserved Domains (6) summary
    smart00674
    Location:987 → 1049
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:531 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:495 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:938 → 975
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1124 → 1237
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_031890763.1 → XP_031746623.1  pogo transposable element with ZNF domain isoform X4

    UniProtKB/TrEMBL
    B2GU88, F6XUK3, F7D5L6
    Related
    ENSXETP00000014984.5, ENSXETT00000014984.5
    Conserved Domains (6) summary
    smart00674
    Location:984 → 1046
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:528 → 549
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:492 → 525
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:935 → 972
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1121 → 1234
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_031890764.1 → XP_031746624.1  pogo transposable element with ZNF domain isoform X5

    UniProtKB/TrEMBL
    B2GU88, F6XUK3, F7D5L6
    Related
    ENSXETP00000044778.5, ENSXETT00000044778.5
    Conserved Domains (6) summary
    smart00674
    Location:984 → 1046
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:528 → 549
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:492 → 525
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:935 → 972
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1121 → 1234
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  7. XM_031890761.1 → XP_031746621.1  pogo transposable element with ZNF domain isoform X1

    UniProtKB/TrEMBL
    A0A8J1IPE7, F7D5L6
    Conserved Domains (6) summary
    smart00674
    Location:987 → 1049
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:531 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:495 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:938 → 975
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1124 → 1237
    rve; Integrase core domain
    cl41773
    Location:94 → 291
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001127965.1: Suppressed sequence

    Description
    NM_001127965.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from zebrafish: pogzb (GeneID:561483).
Nucleotide Protein Strain
Heading Accession and Version

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