ZNF554 zinc finger protein 554 [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: ZNF554provided by VGNC
Official Full Name: zinc finger protein 554provided by VGNC
Primary source: VGNC:VGNC:37301
See related: BGD:BT13222; Ensembl:ENSBTAG00000031352
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: human all
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2023_09	current	ARS-UCD2.0 (GCF_002263795.3)	7	NC_037334.1 (20869136..20881143, complement)

Chromosome 7 - NC_037334.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: zinc finger protein 554

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105037.1 → NP_001098507.1 zinc finger protein 554

See identical proteins and their annotated locations for NP_001098507.1

Status: PROVISIONAL

Source sequence(s)

BC149043

UniProtKB/TrEMBL

A6QNX1, F1MEC1

Related

ENSBTAP00000000456.6, ENSBTAT00000000456.7

Conserved Domains (6) summary

smart00349
Location:14 → 106

KRAB; krueppel associated box

COG5048
Location:295 → 455

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:327 → 347

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:297 → 319

zf-C2H2; Zinc finger, C2H2 type

pfam01352
Location:14 → 53

KRAB; KRAB box

pfam13465
Location:451 → 476

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

Range

20869136..20881143 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_010807009.4 → XP_010805311.3 zinc finger protein 554 isoform X2

Conserved Domains (3) summary

COG5048
Location:419 → 579

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:451 → 471

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:139 → 178

KRAB; KRAB box
XM_010807010.3 → XP_010805312.2 zinc finger protein 554 isoform X1

UniProtKB/TrEMBL

A0AAA9TJL0

Related

ENSBTAP00000097114.1, ENSBTAT00000092088.1

Conserved Domains (3) summary

COG5048
Location:432 → 608

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:452 → 472

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:139 → 178

KRAB; KRAB box