|
Status |
Public on Jul 04, 2023 |
Title |
HCT116_V1_Rep2_Lab2 [206648970096_R01C01] |
Sample type |
genomic |
|
|
Source name |
Human cell line DNA
|
Organism |
Homo sapiens |
Characteristics |
cell line: HCT116 input_ng: 1000
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was isolated from cell lines following Laird et al. 1991 (PMID: 1870982)
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Standard Illumina Protocol
|
Scan protocol |
Standard Illumina Protocol
|
Description |
Evaluating cross-lab reproducibility
|
Data processing |
SeSAMe software v1.17 matrix processed value definition: Normalized average Beta matrix signal intensities value definition: Unmethylated and methylated signal intensities
|
|
|
Submission date |
Apr 03, 2023 |
Last update date |
Jul 04, 2023 |
Contact name |
Wanding Zhou |
Organization name |
Children's Hospital of Philadelphia
|
Department |
Pathology and Lab Medicine
|
Street address |
3501 Civic Center Blvd
|
City |
Philadelphia |
State/province |
PA |
ZIP/Postal code |
19104 |
Country |
USA |
|
|
Platform ID |
GPL21145 |
Series (1) |
GSE228820 |
Evaluating The Infinium Human MethylationEPIC v2 BeadChip |
|