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Sample GSM7139681 Query DataSets for GSM7139681
Status Public on Jul 04, 2023
Title HCT116_V1_Rep2_Lab2 [206648970096_R01C01]
Sample type genomic
Source name Human cell line DNA
Organism Homo sapiens
Characteristics cell line: HCT116
input_ng: 1000
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from cell lines following Laird et al. 1991 (PMID: 1870982)
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Illumina Protocol
Scan protocol Standard Illumina Protocol
Description Evaluating cross-lab reproducibility
Data processing SeSAMe software v1.17
matrix processed value definition: Normalized average Beta
matrix signal intensities value definition: Unmethylated and methylated signal intensities
Submission date Apr 03, 2023
Last update date Jul 04, 2023
Contact name Wanding Zhou
Organization name Children's Hospital of Philadelphia
Department Pathology and Lab Medicine
Street address 3501 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
Platform ID GPL21145
Series (1)
GSE228820 Evaluating The Infinium Human MethylationEPIC v2 BeadChip

Supplementary file Size Download File type/resource
GSM7139681_206648970096_R01C01_Grn.idat.gz 6.9 Mb (ftp)(http) IDAT
GSM7139681_206648970096_R01C01_Red.idat.gz 6.9 Mb (ftp)(http) IDAT
Processed data are available on Series record

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