SF1 splicing factor 1 [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: SF1provided by VGNC
Official Full Name: splicing factor 1provided by VGNC
Primary source: VGNC:VGNC:77225
See related: Ensembl:ENSMMUG00000022606
Gene type: protein coding
RefSeq status: MODEL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	14	NC_041767.1 (9763965..9778273)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	14	NC_027906.1 (9689817..9704206)

Chromosome 14 - NC_041767.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

REN56386 (e-PCR)
- UniSTS:381186

REN56387 (e-PCR)
- UniSTS:381187

REN56390 (e-PCR)
- UniSTS:381190

REN56391 (e-PCR)
- UniSTS:381191

REN56392 (e-PCR)
- UniSTS:381192

REN56393 (e-PCR)
- UniSTS:381193

REN56394 (e-PCR)
- UniSTS:381194

REN56395 (e-PCR)
- UniSTS:381195

REN56396 (e-PCR)
- UniSTS:381196

REN56397 (e-PCR)
- UniSTS:381197

REN56398 (e-PCR)
- UniSTS:381198

REN56399 (e-PCR)
- UniSTS:381199

REN56400 (e-PCR)
- UniSTS:381200

REN56401 (e-PCR)
- UniSTS:381201

REN56402 (e-PCR)
- UniSTS:381202

REN56403 (e-PCR)
- UniSTS:381203

REN56404 (e-PCR)
- UniSTS:381204

REN56408 (e-PCR)
- UniSTS:381208

ECD00773 (e-PCR)
- UniSTS:281882

ECD00774 (e-PCR)
- UniSTS:281883

REN56411 (e-PCR)
- UniSTS:381211

REN56412 (e-PCR)
- UniSTS:381212

REN56413 (e-PCR)
- UniSTS:381213

REN56414 (e-PCR)
- UniSTS:381214

RH91433 (e-PCR)
- UniSTS:87585

REN56425 (e-PCR)
- UniSTS:381225

D11S4328 (e-PCR)
- UniSTS:45102

stSG635672 (e-PCR)
- UniSTS:460853

stSG635673 (e-PCR)
- UniSTS:460854

stSG635674 (e-PCR)
- UniSTS:460855

stSG635675 (e-PCR)
- UniSTS:460856

stSG635676 (e-PCR)
- UniSTS:460857

stSG635677 (e-PCR)
- UniSTS:460858

stSG635678 (e-PCR)
- UniSTS:460859

ECD00564 (e-PCR)
- UniSTS:281674

ECD04767 (e-PCR)
- UniSTS:285838

SHGC-35223 (e-PCR)
- UniSTS:13232

ECD23065 (e-PCR)
- UniSTS:304049

ECD02214 (e-PCR)
- UniSTS:283314

ZNF162 (e-PCR)
- UniSTS:28339

ECD05866 (e-PCR)
- UniSTS:286928

REN56360 (e-PCR)
- UniSTS:381160

REN56361 (e-PCR)
- UniSTS:381161

REN56362 (e-PCR)
- UniSTS:381162

ECD05379 (e-PCR)
- UniSTS:286445

REN56366 (e-PCR)
- UniSTS:381166

REN56367 (e-PCR)
- UniSTS:381167

REN56368 (e-PCR)
- UniSTS:381168

REN56369 (e-PCR)
- UniSTS:381169

REN56370 (e-PCR)
- UniSTS:381170

REN56371 (e-PCR)
- UniSTS:381171

REN56372 (e-PCR)
- UniSTS:381172

REN56373 (e-PCR)
- UniSTS:381173

REN56378 (e-PCR)
- UniSTS:381178

REN56381 (e-PCR)
- UniSTS:381181

REN56382 (e-PCR)
- UniSTS:381182

REN56383 (e-PCR)
- UniSTS:381183

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: splicing factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041767.1 Reference Mmul_10 Primary Assembly

Range

9763965..9778273

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_028833273.1 → XP_028689106.1 splicing factor 1 isoform X5

Conserved Domains (2) summary

smart00343
Location:403 → 418

ZnF_C2HC; zinc finger

COG5176
Location:142 → 382

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_015113862.2 → XP_014969348.1 splicing factor 1 isoform X16

UniProtKB/TrEMBL

A0A1D5Q7H7

Related

ENSMMUP00000029764.3, ENSMMUT00000031813.4

Conserved Domains (2) summary

smart00343
Location:278 → 293

ZnF_C2HC; zinc finger

COG5176
Location:17 → 257

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_015113857.2 → XP_014969343.1 splicing factor 1 isoform X10

Conserved Domains (2) summary

smart00343
Location:278 → 293

ZnF_C2HC; zinc finger

COG5176
Location:17 → 257

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_015113853.2 → XP_014969339.1 splicing factor 1 isoform X7

UniProtKB/TrEMBL

A0A1D5Q7H7, F6SV41, H9EPF7

Related

ENSMMUP00000037470.3, ENSMMUT00000044453.3

Conserved Domains (2) summary

smart00343
Location:278 → 293

ZnF_C2HC; zinc finger

COG5176
Location:17 → 257

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_015113858.2 → XP_014969344.1 splicing factor 1 isoform X12

UniProtKB/TrEMBL

F6Z712, G7NCH7, H9EPF6

Conserved Domains (2) summary

smart00343
Location:278 → 293

ZnF_C2HC; zinc finger

COG5176
Location:17 → 257

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_015113856.2 → XP_014969342.1 splicing factor 1 isoform X9

Conserved Domains (3) summary

smart00343
Location:278 → 293

ZnF_C2HC; zinc finger

cd02395
Location:137 → 255

SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...

pfam16275
Location:18 → 130

SF1-HH; Splicing factor 1 helix-hairpin domain
XM_028833278.1 → XP_028689111.1 splicing factor 1 isoform X11

Conserved Domains (2) summary

smart00343
Location:278 → 293

ZnF_C2HC; zinc finger

COG5176
Location:17 → 257

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_015113861.2 → XP_014969347.1 splicing factor 1 isoform X14

Conserved Domains (2) summary

smart00343
Location:163 → 178

ZnF_C2HC; zinc finger

cd02395
Location:22 → 140

SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
XM_028833279.1 → XP_028689112.1 splicing factor 1 isoform X15

UniProtKB/TrEMBL

G7NCH7

Conserved Domains (2) summary

smart00343
Location:163 → 178

ZnF_C2HC; zinc finger

cd22382
Location:20 → 112

KH-I_SF1; type I K homology (KH) RNA-binding domain found in splicing factor 1 (SF1) and similar proteins
XM_015113859.2 → XP_014969345.1 splicing factor 1 isoform X13

UniProtKB/TrEMBL

G7NCH7

Conserved Domains (1) summary

cl25681
Location:17 → 257

SF1-HH; Splicing factor 1 helix-hairpin domain
XM_028833271.1 → XP_028689104.1 splicing factor 1 isoform X3

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_028833274.1 → XP_028689107.1 splicing factor 1 isoform X6

Related

ENSMMUP00000029763.4, ENSMMUT00000031812.4

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_028833269.1 → XP_028689102.1 splicing factor 1 isoform X1

UniProtKB/TrEMBL

A0A1D5Q7H7

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_028833272.1 → XP_028689105.1 splicing factor 1 isoform X4

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_028833270.1 → XP_028689103.1 splicing factor 1 isoform X2

UniProtKB/TrEMBL

A0A1D5Q7H7

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_028833276.1 → XP_028689109.1 splicing factor 1 isoform X8

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
XM_028833277.1 → XP_028689110.1 splicing factor 1 isoform X1

UniProtKB/TrEMBL

A0A1D5Q7H7

Conserved Domains (2) summary

smart00343
Location:252 → 267

ZnF_C2HC; zinc finger

COG5176
Location:10 → 231

MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

Nucleotide		Protein
Heading	Accession and Version	Protein

Additional links

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Gene LinkOut

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Molecular Biology Databases

Bgee database

SF1 gene expression

GenScript latest version of gene cDNA ORF Clone

GenScript latest version of gene cDNA ORF Clone

Kyoto Encyclopedia of Genes and Genomes

Kyoto Encyclopedia of Genes and Genomes

OMA Browser: Orthologous MAtrix

OMA Browser: Orthologous MAtrix

OrthoDB catalog of orthologs

Orthologs

Miscellaneous

OriGene

Order Sf1 cDNA clone/Protein/Antibody/RNAi

Gene

Genes and mapped phenotypes

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Sequence content

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SF1 splicing factor 1 [ Macaca mulatta (Rhesus monkey) ]

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Summary

Genomic context

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

General gene information

Markers

Homology

Gene Ontology Provided by RefSeq

General protein information

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

Reference Mmul_10 Primary Assembly

Genomic

mRNA and Protein(s)

Additional links

Gene LinkOut

Supplemental Content

Table of contents

Genome Browsers

Links to other resources

General information

Feedback

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Recent activity

Genes and mapped phenotypes

Result Filters

Gene sources

Categories

Sequence content

Status

Chromosome locations

Chromosome locations

Additional filters

SF1 splicing factor 1 [ Macaca mulatta (Rhesus monkey) ]

Reference Mmul_10 Primary Assembly

Genomic

mRNA and Protein(s)

Supplemental Content

Table of contents

Genome Browsers

Related information

Links to other resources

General information

Related sites

Feedback

Subscription

Recent activity