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    vas ATP-dependent RNA helicase vasa [ Apis mellifera (honey bee) ]

    Gene ID: 410692, updated on 9-Nov-2023

    Summary

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    Gene symbol
    vas
    Gene description
    ATP-dependent RNA helicase vasa
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    Vasa; GB14804; GB42306
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    Genomic context

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    Location:
    chromosome: LG1
    Exon count:
    4
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG1 NC_037638.1 (27486659..27490304)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG1 NC_007070.3 (28622408..28626024, complement)

    Linkage Group LG1 - NC_037638.1Genomic Context describing neighboring genes Neighboring gene probable tyrosine-protein phosphatase F54C8.4 Neighboring gene uncharacterized LOC102654799 Neighboring gene protein DPCD Neighboring gene segmentation protein cap'n'collar Neighboring gene endoplasmic reticulum aminopeptidase 1 Neighboring gene high affinity copper uptake protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase vasa
    Names
    GB14804-PA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040255.1 → NP_001035345.1  ATP-dependent RNA helicase vasa

      See identical proteins and their annotated locations for NP_001035345.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ288391
      UniProtKB/TrEMBL
      A0A8B6WZ30, A0A8U1BXJ2, Q2PZC2
      Conserved Domains (3) summary
      smart00487
      Location:211 → 424
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:424 → 554
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:198 → 411
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037638.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      27486659..27490304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006571702.3 → XP_006571765.2  ATP-dependent RNA helicase vasa isoform X1

      UniProtKB/TrEMBL
      A0A7M7GZR6, A0A8B6ZEA6
      Conserved Domains (1) summary
      COG0513
      Location:171 → 573
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    Nucleotide Protein Strain
    Heading Accession and Version

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