Format

Send to:

Choose Destination
    • Showing Current items.

    Dppa5a developmental pluripotency associated 5A [ Mus musculus (house mouse) ]

    Gene ID: 434423, updated on 31-Jan-2019

    Summary

    Official Symbol
    Dppa5aprovided by MGI
    Official Full Name
    developmental pluripotency associated 5Aprovided by MGI
    Primary source
    MGI:MGI:101800
    See related
    Ensembl:ENSMUSG00000060461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Esg1; Dppa5; ecat2; AA536857
    Expression
    Biased expression in bladder adult (RPKM 3.0), CNS E18 (RPKM 1.3) and 8 other tissues See more
    Orthologs

    Genomic context

    See Dppa5a in Genome Data Viewer
    Location:
    9; 9 E1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (78367052..78368199, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (78214859..78216006, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene oocyte maturation, beta Neighboring gene glutathione S-transferase, alpha 2 (Yc2) Neighboring gene oocyte expressed protein Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 43

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    developmental pluripotency-associated protein 5A
    Names
    ES cell-associated transcript 2 protein
    ESG-1
    developmental pluripotency associated 5
    embryonal stem cell specific gene 1
    embryonal stem cell-specific gene 1 protein
    mDppa5
    protein pH 34

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025274.3NP_079550.2  developmental pluripotency-associated protein 5A

      See identical proteins and their annotated locations for NP_079550.2

      Status: VALIDATED

      Source sequence(s)
      AV457404, AV476247
      Consensus CDS
      CCDS23360.1
      UniProtKB/Swiss-Prot
      Q9CQS7
      Related
      ENSMUSP00000071881.5, ENSMUST00000071991.5
      Conserved Domains (1) summary
      pfam16005
      Location:1192
      MOEP19; KH-like RNA-binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      78367052..78368199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center