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    RBM43 RNA binding motif protein 43 [ Homo sapiens (human) ]

    Gene ID: 375287, updated on 5-Mar-2024

    Summary

    Official Symbol
    RBM43provided by HGNC
    Official Full Name
    RNA binding motif protein 43provided by HGNC
    Primary source
    HGNC:HGNC:24790
    See related
    Ensembl:ENSG00000184898 AllianceGenome:HGNC:24790
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C2orf38
    Summary
    Predicted to enable RNA binding activity. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in thyroid (RPKM 7.0), ovary (RPKM 6.7) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See RBM43 in Genome Data Viewer
    Location:
    2q23.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (151247940..151261863, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (151699679..151713604, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (152104454..152118377, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985826 Neighboring gene fatty acid binding protein 5 pseudogene 10 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16629 Neighboring gene N-myc and STAT interactor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16631 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16634 Neighboring gene uncharacterized LOC107985827

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association search for type 2 diabetes genes in African Americans.
    EBI GWAS Catalog
    Genome-wide association study link novel loci to endometriosis.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198557.3NP_940959.1  RNA-binding protein 43

      See identical proteins and their annotated locations for NP_940959.1

      Status: VALIDATED

      Source sequence(s)
      AC018731, BC136411, BX337439, DA658209
      Consensus CDS
      CCDS2191.1
      UniProtKB/Swiss-Prot
      B2RMT5, Q6ZSC3
      Related
      ENSP00000331211.5, ENST00000331426.6
      Conserved Domains (1) summary
      cd12546
      Location:1593
      RRM_RBM43; RNA recognition motif in vertebrate RNA-binding protein 43 (RBM43)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      151247940..151261863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047444249.1XP_047300205.1  RNA-binding protein 43 isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      151699679..151713604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)