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    Ccz1 CCZ1 vacuolar protein trafficking and biogenesis associated [ Mus musculus (house mouse) ]

    Gene ID: 231874, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ccz1provided by MGI
    Official Full Name
    CCZ1 vacuolar protein trafficking and biogenesis associatedprovided by MGI
    Primary source
    MGI:MGI:2141070
    See related
    Ensembl:ENSMUSG00000029617
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU022870
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 17.1), CNS E14 (RPKM 15.4) and 28 other tissues See more
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    Genomic context

    See Ccz1 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (143924727..143951744, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (143987909..144014883, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (144748778..144775722, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene ankyrin repeat domain 61 Neighboring gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 Neighboring gene PMS1 homolog2, mismatch repair system component Neighboring gene predicted gene, 24311 Neighboring gene predicted gene, 54312 Neighboring gene predicted gene, 33427 Neighboring gene oncomodulin

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    • Homologs of the Ccz1 gene: The Ccz1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, A.thaliana, rice, and frog.
    • Orthologs

    Clone Names

    • MGC56855

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of Mon1-Ccz1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vacuolar fusion protein CCZ1 homolog
    Names
    CCZ1 vacuolar protein trafficking and biogenesis associated homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177682.3NP_808350.1  vacuolar fusion protein CCZ1 homolog

      See identical proteins and their annotated locations for NP_808350.1

      Status: PROVISIONAL

      Source sequence(s)
      BC048077
      Consensus CDS
      CCDS19846.1
      UniProtKB/Swiss-Prot
      Q8C1Y8
      Related
      ENSMUSP00000031621.10, ENSMUST00000031621.11
      Conserved Domains (1) summary
      pfam08217
      Location:25477
      DUF1712; Fungal domain of unknown function (DUF1712)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      143924727..143951744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320876.2XP_017176365.1  vacuolar fusion protein CCZ1 homolog isoform X1

      Conserved Domains (1) summary
      pfam08217
      Location:1336
      DUF1712; Fungal domain of unknown function (DUF1712)

    RNA

    1. XR_004942510.1 RNA Sequence

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