Format

Send to:

Choose Destination
    • Showing Current items.

    Ammecr1l AMME chromosomal region gene 1-like [ Mus musculus (house mouse) ]

    Gene ID: 225339, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ammecr1lprovided by MGI
    Official Full Name
    AMME chromosomal region gene 1-likeprovided by MGI
    Primary source
    MGI:MGI:2442711
    See related
    Ensembl:ENSMUSG00000041915
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU022236; AU040755; AW111353; 5430429D03Rik; E230022H04Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 16.4), limb E14.5 (RPKM 8.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ammecr1l in Genome Data Viewer
    Location:
    18; 18 B1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (31759475..31784083)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (31919534..31942397)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 46 Neighboring gene Sin3A associated protein Neighboring gene polymerase (RNA) II (DNA directed) polypeptide D Neighboring gene WD repeat domain 33 Neighboring gene glutathione S-transferase, mu 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC32132

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242430.1NP_001229359.1  AMMECR1-like protein isoform 1

      See identical proteins and their annotated locations for NP_001229359.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC161511, AK133018
      UniProtKB/TrEMBL
      Q3V0N3
      Conserved Domains (1) summary
      pfam01871
      Location:183353
      AMMECR1; AMMECR1
    2. NM_153515.4NP_705735.1  AMMECR1-like protein isoform 2

      See identical proteins and their annotated locations for NP_705735.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC161511, AK151060, BC056948
      Consensus CDS
      CCDS37753.1
      UniProtKB/Swiss-Prot
      Q8JZZ6
      UniProtKB/TrEMBL
      Q3UAR8
      Related
      ENSMUSP00000111475.2, ENSMUST00000115808.3
      Conserved Domains (1) summary
      pfam01871
      Location:109279
      AMMECR1; AMMECR1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      31759475..31784083
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525843.3XP_006525906.1  AMMECR1-like protein isoform X3

      See identical proteins and their annotated locations for XP_006525906.1

      UniProtKB/Swiss-Prot
      Q8JZZ6
      Conserved Domains (1) summary
      pfam01871
      Location:109279
      AMMECR1; AMMECR1
    2. XM_006525841.3XP_006525904.1  AMMECR1-like protein isoform X1

      Related
      ENSMUSP00000157050.1, ENSMUST00000234191.1
      Conserved Domains (1) summary
      pfam01871
      Location:183348
      AMMECR1; AMMECR1
    3. XM_006525844.2XP_006525907.1  AMMECR1-like protein isoform X4

      Conserved Domains (1) summary
      pfam01871
      Location:183305
      AMMECR1; AMMECR1
    4. XM_006525842.1XP_006525905.1  AMMECR1-like protein isoform X2

      Conserved Domains (1) summary
      pfam01871
      Location:183348
      AMMECR1; AMMECR1

    RNA

    1. XR_385986.3 RNA Sequence

    Support Center