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AMMECR1L AMMECR1 like [ Homo sapiens (human) ]

Gene ID: 83607, updated on 12-Oct-2019

Summary

Official Symbol
AMMECR1Lprovided by HGNC
Official Full Name
AMMECR1 likeprovided by HGNC
Primary source
HGNC:HGNC:28658
See related
Ensembl:ENSG00000144233
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 10.0), gall bladder (RPKM 6.0) and 25 other tissues See more
Orthologs

Genomic context

See AMMECR1L in Genome Data Viewer
Location:
2q14.3
Exon count:
11
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (127861630..127887575, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (128619204..128643635, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 395, pseudogene Neighboring gene RNA polymerase II subunit D Neighboring gene ribosomal protein S26 pseudogene 19 Neighboring gene uncharacterized LOC107985803 Neighboring gene uncharacterized LOC107985944 Neighboring gene archaelysin family metallopeptidase 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4268, FLJ38552

General protein information

Preferred Names
AMMECR1-like protein
Names
AMME chromosomal region gene 1-like

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199140.1NP_001186069.1  AMMECR1-like protein

    See identical proteins and their annotated locations for NP_001186069.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' UTR and encodes the same protein, as compared to variant 1.
    Source sequence(s)
    AK304145, BC016181
    Consensus CDS
    CCDS2152.1
    UniProtKB/Swiss-Prot
    Q6DCA0
    UniProtKB/TrEMBL
    A0A024RAG1
    Related
    ENSP00000272647.5, ENST00000272647.9
    Conserved Domains (1) summary
    pfam01871
    Location:109279
    AMMECR1; AMMECR1
  2. NM_031445.2NP_113633.2  AMMECR1-like protein

    See identical proteins and their annotated locations for NP_113633.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) and variant 2 encode the same protein.
    Source sequence(s)
    BC016181
    Consensus CDS
    CCDS2152.1
    UniProtKB/Swiss-Prot
    Q6DCA0
    UniProtKB/TrEMBL
    A0A024RAG1
    Related
    ENSP00000376726.1, ENST00000393001.1
    Conserved Domains (1) summary
    pfam01871
    Location:109279
    AMMECR1; AMMECR1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    127861630..127887575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011511952.3XP_011510254.1  AMMECR1-like protein isoform X1

    See identical proteins and their annotated locations for XP_011510254.1

    Conserved Domains (1) summary
    pfam01871
    Location:109324
    AMMECR1; AMMECR1
  2. XM_005263807.5XP_005263864.1  AMMECR1-like protein isoform X3

    See identical proteins and their annotated locations for XP_005263864.1

    Conserved Domains (1) summary
    pfam01871
    Location:137242
    AMMECR1; AMMECR1
  3. XM_005263806.5XP_005263863.1  AMMECR1-like protein isoform X2

    See identical proteins and their annotated locations for XP_005263863.1

    Conserved Domains (1) summary
    pfam01871
    Location:137287
    AMMECR1; AMMECR1
  4. XM_005263804.5XP_005263861.1  AMMECR1-like protein isoform X1

    See identical proteins and their annotated locations for XP_005263861.1

    Conserved Domains (1) summary
    pfam01871
    Location:109324
    AMMECR1; AMMECR1
  5. XM_011511954.3XP_011510256.1  AMMECR1-like protein isoform X4

    Conserved Domains (1) summary
    cl00911
    Location:83196
    AMMECR1; AMMECR1
  6. XM_011511955.2XP_011510257.1  AMMECR1-like protein isoform X5

    Conserved Domains (1) summary
    pfam01871
    Location:1165
    AMMECR1; AMMECR1
  7. XM_011511956.3XP_011510258.1  AMMECR1-like protein isoform X6

    Conserved Domains (1) summary
    cl00911
    Location:109172
    AMMECR1; AMMECR1
  8. XM_017005063.2XP_016860552.1  AMMECR1-like protein isoform X7

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