U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AMMECR1L AMMECR1 like [ Homo sapiens (human) ]

Gene ID: 83607, updated on 4-Nov-2022

Summary

Official Symbol
AMMECR1Lprovided by HGNC
Official Full Name
AMMECR1 likeprovided by HGNC
Primary source
HGNC:HGNC:28658
See related
Ensembl:ENSG00000144233 AllianceGenome:HGNC:28658
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 10.0), gall bladder (RPKM 6.0) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See AMMECR1L in Genome Data Viewer
Location:
2q14.3
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (127861630..127885956, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (128296887..128321215, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (128619204..128643530, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 395, pseudogene Neighboring gene RNA polymerase II subunit D Neighboring gene ribosomal protein S26 pseudogene 19 Neighboring gene uncharacterized LOC107985803 Neighboring gene uncharacterized LOC107985944 Neighboring gene archaelysin family metallopeptidase 2 pseudogene

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4268, FLJ38552

Gene Ontology Provided by GOA

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
AMMECR1-like protein
Names
AMME chromosomal region gene 1-like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199140.2NP_001186069.1  AMMECR1-like protein isoform 1

    See identical proteins and their annotated locations for NP_001186069.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' UTR and encodes the same protein, as compared to variant 1.
    Source sequence(s)
    AC012306
    Consensus CDS
    CCDS2152.1
    UniProtKB/Swiss-Prot
    B4E276, Q6DCA0
    UniProtKB/TrEMBL
    A0A024RAG1
    Related
    ENSP00000272647.6, ENST00000272647.10
    Conserved Domains (1) summary
    pfam01871
    Location:110279
    AMMECR1
  2. NM_001410953.1NP_001397882.1  AMMECR1-like protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC012306
    Consensus CDS
    CCDS92865.1
    UniProtKB/TrEMBL
    A0A7P0Z454
  3. NM_001410954.1NP_001397883.1  AMMECR1-like protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC012306
    Consensus CDS
    CCDS92863.1
    UniProtKB/TrEMBL
    A0A7P0T9C2
  4. NM_031445.2NP_113633.2  AMMECR1-like protein isoform 1

    See identical proteins and their annotated locations for NP_113633.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) and variant 2 encode the same protein.
    Source sequence(s)
    BC016181
    Consensus CDS
    CCDS2152.1
    UniProtKB/Swiss-Prot
    B4E276, Q6DCA0
    UniProtKB/TrEMBL
    A0A024RAG1
    Related
    ENSP00000376726.1, ENST00000393001.1
    Conserved Domains (1) summary
    pfam01871
    Location:110279
    AMMECR1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    127861630..127885956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005263807.6XP_005263864.1  AMMECR1-like protein isoform X3

    Related
    ENSP00000505606.1, ENST00000680886.1
    Conserved Domains (1) summary
    pfam01871
    Location:137242
    AMMECR1
  2. XM_005263806.6XP_005263863.1  AMMECR1-like protein isoform X2

    See identical proteins and their annotated locations for XP_005263863.1

    Conserved Domains (1) summary
    cl00911
    Location:137287
    AMMECR1
  3. XM_005263804.6XP_005263861.1  AMMECR1-like protein isoform X1

    Related
    ENSP00000505104.1, ENST00000681844.1
    Conserved Domains (1) summary
    pfam01871
    Location:110324
    AMMECR1
  4. XM_011511956.4XP_011510258.1  AMMECR1-like protein isoform X5

    Conserved Domains (1) summary
    cl00911
    Location:109172
    AMMECR1; AMMECR1
  5. XM_017005063.3XP_016860552.1  AMMECR1-like protein isoform X6

  6. XM_047445956.1XP_047301912.1  AMMECR1-like protein isoform X4

    UniProtKB/TrEMBL
    A0A7P0TAB6
    Related
    ENSP00000505484.1, ENST00000680246.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    128296887..128321215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)