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    Zfp979 zinc finger protein 979 [ Mus musculus (house mouse) ]

    Gene ID: 112422, updated on 31-Jan-2019

    Summary

    Official Symbol
    Zfp979provided by MGI
    Official Full Name
    zinc finger protein 979provided by MGI
    Primary source
    MGI:MGI:2148252
    See related
    Ensembl:ENSMUSG00000066000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ssm1b; 2610305D13Rik
    Expression
    Broad expression in liver E14 (RPKM 1.1), bladder adult (RPKM 0.9) and 17 other tissues See more

    Genomic context

    See Zfp979 in Genome Data Viewer
    Location:
    4; 4 E1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (147611936..147642508, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (146986045..147183916, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 20 Neighboring gene zinc finger protein 985 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene zinc finger protein 534 Neighboring gene predicted gene 13137

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC112422

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145078.2NP_659544.2  uncharacterized protein LOC112422

      Status: VALIDATED

      Source sequence(s)
      AL606910, CD548052, CF161903, DV659285
      Consensus CDS
      CCDS59663.1
      UniProtKB/TrEMBL
      A2A799
      Related
      ENSMUSP00000038153.7, ENSMUST00000037565.13
      Conserved Domains (5) summary
      smart00349
      Location:2870
      KRAB; krueppel associated box
      COG5048
      Location:82407
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259279
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:2867
      KRAB; KRAB box
      pfam13465
      Location:355380
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      147611936..147642508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319919.1XP_017175408.1  uncharacterized protein LOC112422 isoform X1

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_166299.2 Reference GRCm38.p4 NOD/MrkTac

      Range
      506899..866721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017318990.1XP_017174479.1  uncharacterized protein LOC112422 isoform X2

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