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    Zfp979 zinc finger protein 979 [ Mus musculus (house mouse) ]

    Gene ID: 112422, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp979provided by MGI
    Official Full Name
    zinc finger protein 979provided by MGI
    Primary source
    MGI:MGI:2148252
    See related
    Ensembl:ENSMUSG00000066000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ssm1b; 2610305D13Rik
    Expression
    Broad expression in liver E14 (RPKM 1.1), bladder adult (RPKM 0.9) and 17 other tissues See more
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    Genomic context

    See Zfp979 in Genome Data Viewer
    Location:
    4; 4 E1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (147696393..147727004, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (147611936..147642508, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (146986045..147183916, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 20 Neighboring gene zinc finger protein 985 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene zinc finger protein 534 Neighboring gene predicted gene 13137

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein LOC112422

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145078.2NP_659544.2  uncharacterized protein LOC112422

      Status: VALIDATED

      Source sequence(s)
      AL606910, CD548052, CF161903, DV659285
      Consensus CDS
      CCDS59663.1
      UniProtKB/TrEMBL
      A2A799
      Related
      ENSMUSP00000038153.8, ENSMUST00000037565.14
      Conserved Domains (5) summary
      smart00349
      Location:2870
      KRAB; krueppel associated box
      COG5048
      Location:82407
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259279
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:2867
      KRAB; KRAB box
      pfam13465
      Location:355380
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      147696393..147727004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319919.2XP_017175408.1  uncharacterized protein LOC112422 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:29346
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:256339
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:206226
      ZF_C2H2; C2H2 Zn finger [structural motif]
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