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    si:rp71-1g18.1 uncharacterized LOC108937880 [ Scleropages formosus (Asian bonytongue) ]

    Gene ID: 108937880, updated on 14-Mar-2024

    Summary

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    Gene symbol
    si:rp71-1g18.1
    Gene description
    uncharacterized LOC108937880
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scleropages formosus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
    Orthologs
    zebrafish all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current fSclFor1.1 (GCF_900964775.1) 1 NC_041806.1 (16784815..16788022)
    100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372011.1 (545502..548494, complement)

    Chromosome 1 - NC_041806.1Genomic Context describing neighboring genes Neighboring gene astrocytic phosphoprotein PEA-15-like Neighboring gene calsequestrin 1a Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene FACT complex subunit SPT16 Neighboring gene TOX high mobility group box family member 4 a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 454-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSclFor1.1 Primary Assembly

    Genomic

    1. NC_041806.1 Reference fSclFor1.1 Primary Assembly

      Range
      16784815..16788022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018758090.2 → XP_018613606.2  zinc finger protein 454-like isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:206 → 394
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:338 → 358
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:406 → 431
      zf-H2C2_2; Zinc-finger double domain

    2. XM_029250154.1 → XP_029105987.1  zinc finger protein 454-like isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:243 → 307
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:251 → 271
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:291 → 315
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases