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ZNF502 zinc finger protein 502 [ Homo sapiens (human) ]

Gene ID: 91392, updated on 12-Oct-2019

Summary

Official Symbol
ZNF502provided by HGNC
Official Full Name
zinc finger protein 502provided by HGNC
Primary source
HGNC:HGNC:23718
See related
Ensembl:ENSG00000196653
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.5), prostate (RPKM 2.1) and 25 other tissues See more
Orthologs

Genomic context

See ZNF502 in Genome Data Viewer
Location:
3p21.31
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (44712643..44723831)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (44754135..44765323)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ZKSCAN7 ZNF cluster antisense RNA 1 Neighboring gene zinc finger protein OZF-like Neighboring gene uncharacterized LOC105377056 Neighboring gene suppressor of cytokine signaling 5 pseudogene 3 Neighboring gene zinc finger protein 501 Neighboring gene KIAA1143

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12515, FLJ14855

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
positive regulation by host of viral process IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation by host of viral release from host cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134440.1NP_001127912.1  zinc finger protein 502

    See identical proteins and their annotated locations for NP_001127912.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 5. Variants 1-5 encode the same protein.
    Source sequence(s)
    BC028377, DA823790, DB264545
    Consensus CDS
    CCDS2719.1
    UniProtKB/Swiss-Prot
    Q8TBZ5
    UniProtKB/TrEMBL
    A0A024R2Z2
    Conserved Domains (2) summary
    COG5048
    Location:151538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:325345
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001134441.1NP_001127913.1  zinc finger protein 502

    See identical proteins and their annotated locations for NP_001127913.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 5. Variants 1-5 encode the same protein.
    Source sequence(s)
    BC028377, DA935088, DB264545
    Consensus CDS
    CCDS2719.1
    UniProtKB/Swiss-Prot
    Q8TBZ5
    UniProtKB/TrEMBL
    A0A024R2Z2
    Related
    ENSP00000397390.1, ENST00000449836.5
    Conserved Domains (2) summary
    COG5048
    Location:151538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:325345
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. NM_001134442.2NP_001127914.1  zinc finger protein 502

    See identical proteins and their annotated locations for NP_001127914.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 5. Variants 1-5 encode the same protein.
    Source sequence(s)
    AK027761, BC028377
    Consensus CDS
    CCDS2719.1
    UniProtKB/Swiss-Prot
    Q8TBZ5
    UniProtKB/TrEMBL
    A0A024R2Z2, Q96K08
    Related
    ENSP00000406469.2, ENST00000436624.7
    Conserved Domains (2) summary
    COG5048
    Location:151538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:325345
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. NM_001282880.1NP_001269809.1  zinc finger protein 502

    See identical proteins and their annotated locations for NP_001269809.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) represents the longest transcript. Variants 1-5 encode the same protein.
    Source sequence(s)
    AK027761, BC028377, DA511196
    Consensus CDS
    CCDS2719.1
    UniProtKB/Swiss-Prot
    Q8TBZ5
    UniProtKB/TrEMBL
    A0A024R2Z2, Q96K08
    Conserved Domains (2) summary
    COG5048
    Location:151538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:325345
    ZF_C2H2; C2H2 Zn finger [structural motif]
  5. NM_033210.4NP_149987.2  zinc finger protein 502

    See identical proteins and their annotated locations for NP_149987.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR, compared to variant 5. Variants 1-5 encode the same protein.
    Source sequence(s)
    BC028377, DB264545
    Consensus CDS
    CCDS2719.1
    UniProtKB/Swiss-Prot
    Q8TBZ5
    UniProtKB/TrEMBL
    A0A024R2Z2
    Related
    ENSP00000296091.4, ENST00000296091.8
    Conserved Domains (2) summary
    COG5048
    Location:151538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:325345
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    44712643..44723831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_009646197.1 Reference GRCh38.p13 PATCHES

    Range
    237993..249181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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