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ZNF835 zinc finger protein 835 [ Homo sapiens (human) ]

Gene ID: 90485, updated on 5-Jan-2022

Summary

Official Symbol
ZNF835provided by HGNC
Official Full Name
zinc finger protein 835provided by HGNC
Primary source
HGNC:HGNC:34332
See related
Ensembl:ENSG00000127903
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BC37295_3
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in ovary (RPKM 1.2), brain (RPKM 0.9) and 20 other tissues See more
Orthologs
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Genomic context

See ZNF835 in Genome Data Viewer
Location:
19q13.43
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (56661980..56671783, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (57173348..57183125, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ZNF71-SMIM17 readthrough (NMD candidate) Neighboring gene Sharpr-MPRA regulatory region 15209 Neighboring gene small integral membrane protein 17 Neighboring gene uncharacterized LOC105372473 Neighboring gene uncharacterized LOC105372472 Neighboring gene olfactory receptor family 5 subfamily AH member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005850.3NP_001005850.2  zinc finger protein 835

    See identical proteins and their annotated locations for NP_001005850.2

    Status: VALIDATED

    Source sequence(s)
    AC007228, AK023017, AK299565, DB536138, DC382896
    Consensus CDS
    CCDS56105.1
    UniProtKB/Swiss-Prot
    Q9Y2P0
    Related
    ENSP00000444747.1, ENST00000537055.4
    Conserved Domains (5) summary
    COG5048
    Location:136487
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:140160
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:474496
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:348373
    zf-H2C2_2; Zinc-finger double domain
    cl00955
    Location:178243
    Ribosomal_L34e; Ribosomal protein L34e

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    56661980..56671783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005259382.2XP_005259439.1  zinc finger protein 835 isoform X1

    See identical proteins and their annotated locations for XP_005259439.1

    UniProtKB/Swiss-Prot
    Q9Y2P0
    Conserved Domains (5) summary
    COG5048
    Location:136487
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:140160
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:474496
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:348373
    zf-H2C2_2; Zinc-finger double domain
    cl00955
    Location:178243
    Ribosomal_L34e; Ribosomal protein L34e
  2. XM_005259383.3XP_005259440.1  zinc finger protein 835 isoform X1

    See identical proteins and their annotated locations for XP_005259440.1

    UniProtKB/Swiss-Prot
    Q9Y2P0
    Conserved Domains (5) summary
    COG5048
    Location:136487
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:140160
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:474496
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:348373
    zf-H2C2_2; Zinc-finger double domain
    cl00955
    Location:178243
    Ribosomal_L34e; Ribosomal protein L34e
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