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KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 90011, updated on 23-Nov-2021

Summary

Official Symbol
KIR3DX1provided by HGNC
Official Full Name
killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:25043
See related
Ensembl:ENSG00000104970
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LENG12; KIR3DL0
Expression
Low expression observed in reference dataset See more
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Genomic context

See KIR3DX1 in Genome Data Viewer
Location:
19q13.42
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (54532692..54545768)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55043909..55057050)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene leukocyte associated immunoglobulin like receptor 2 Neighboring gene uncharacterized LOC105372460 Neighboring gene uncharacterized LOC107985347 Neighboring gene uncharacterized LOC105372461 Neighboring gene leukocyte immunoglobulin like receptor A2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • immunoglobulin-like receptor KIR3DL0
  • killer cell immunoglobulin-like receptor, three domains, X1
  • leukocyte receptor cluster (LRC) member 12

Clone Names

  • FLJ00060

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026716.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024467, BC033195, BC171827, DQ224421
    Related
    ENST00000610811.4
  2. NR_104095.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024467, BC033195, BC171827
  3. NR_104096.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024467, BC033195, BC171827, BC171832
  4. NR_104097.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024467, BC033195, BC171838
  5. NR_136268.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) represents an alternate allele located on the reference alternate locus, ALT_REF_LOCI_7.
    Source sequence(s)
    AC009892, AC104536

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    54532692..54545768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003571054.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    438900..451967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_7

Genomic

  1. NW_003571060.1 Reference GRCh38.p13 ALT_REF_LOCI_7

    Range
    437417..450484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_9

Genomic

  1. NT_187693.1 Reference GRCh38.p13 ALT_REF_LOCI_9

    Range
    515023..528164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001047605.1: Suppressed sequence

    Description
    NM_001047605.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_033206.1: Suppressed sequence

    Description
    NM_033206.1: This RefSeq was suppressed because the protein and transcript are insufficiently supported by other data and the transcript is a nonsense-mediated decay (NMD) candidate.
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