KAT2B lysine acetyltransferase 2B [Homo sapiens (human)] - Gene

Summary

Official Symbol: KAT2Bprovided by HGNC
Official Full Name: lysine acetyltransferase 2Bprovided by HGNC
Primary source: HGNC:HGNC:8638
See related: Ensembl:ENSG00000114166 MIM:602303; AllianceGenome:HGNC:8638
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: CAF; PCAF; P/CAF
Summary: CBP and p300 are large nuclear proteins that bind to many sequence-specific factors involved in cell growth and/or differentiation, including c-jun and the adenoviral oncoprotein E1A. The protein encoded by this gene associates with p300/CBP. It has in vitro and in vivo binding activity with CBP and p300, and competes with E1A for binding sites in p300/CBP. It has histone acetyl transferase activity with core histones and nucleosome core particles, indicating that this protein plays a direct role in transcriptional regulation. [provided by RefSeq, Jul 2008]
Expression: Ubiquitous expression in brain (RPKM 17.7), bone marrow (RPKM 16.3) and 25 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 3p24.3

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
110	current	GRCh38.p14 (GCF_000001405.40)	3	NC_000003.12 (20040446..20154404)
110	current	T2T-CHM13v2.0 (GCF_009914755.1)	3	NC_060927.1 (20044513..20158472)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	3	NC_000003.11 (20081938..20195896)

Chromosome 3 - NC_000003.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Individual functions of the histone acetyl transferases CBP and p300 in regulating the inflammatory response of synovial fibroblasts.
Title: Individual functions of the histone acetyl transferases CBP and p300 in regulating the inflammatory response of synovial fibroblasts.
Acetylation of the influenza A virus polymerase subunit PA in the N-terminal domain positively regulates its endonuclease activity.
Title: Acetylation of the influenza A virus polymerase subunit PA in the N-terminal domain positively regulates its endonuclease activity.
Differential Expression Study of Lysine Crotonylation and Proteome for Chronic Obstructive Pulmonary Disease Combined with Type II Respiratory Failure.
Title: Differential Expression Study of Lysine Crotonylation and Proteome for Chronic Obstructive Pulmonary Disease Combined with Type II Respiratory Failure.
Promoter-specific changes in initiation, elongation, and homeostasis of histone H3 acetylation during CBP/p300 inhibition.
Title: Promoter-specific changes in initiation, elongation, and homeostasis of histone H3 acetylation during CBP/p300 inhibition.
Lysine Acetyltransferase 2B predicts favorable prognosis and functions as anti-oncogene in cervical carcinoma.
Title: Lysine Acetyltransferase 2B predicts favorable prognosis and functions as anti-oncogene in cervical carcinoma.
P300/CBP-Associated Factor Activates Cardiac Fibroblasts by SMAD2 Acetylation.
Title: P300/CBP-Associated Factor Activates Cardiac Fibroblasts by SMAD2 Acetylation.
In-vitro acetylation of SARS-CoV and SARS-CoV-2 nucleocapsid proteins by human PCAF and GCN5.
Title: In-vitro acetylation of SARS-CoV and SARS-CoV-2 nucleocapsid proteins by human PCAF and GCN5.
Histone acetyltransferase p300 mediates the upregulation of CTEN induced by the activation of EGFR signaling in cancer cells.
Title: Histone acetyltransferase p300 mediates the upregulation of CTEN induced by the activation of EGFR signaling in cancer cells.
Identification of epigenetic factor KAT2B gene variants for possible roles in congenital heart diseases.
Title: Identification of epigenetic factor KAT2B gene variants for possible roles in congenital heart diseases.
PCAF Involvement in Lamin A/C-HDAC2 Interplay during the Early Phase of Muscle Differentiation.
Title: PCAF Involvement in Lamin A/C-HDAC2 Interplay during the Early Phase of Muscle Differentiation.

Submit: New GeneRIF Correction See all GeneRIFs (158)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample. EBI GWAS Catalog EBI GWAS CatalogPubMed
A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder. EBI GWAS Catalog EBI GWAS CatalogPubMed
Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

HIV-1 interactions

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Protein interactions

Protein	Gene	Interaction	Pubs
Tat	tat	Acetylation of HIV-1 Tat by P/CAF at Lys28 and binding of P/CAF to Lys50 acetylated Tat regulates Tat binding to cyclin T1 and HIV-1 TAR RNA, as well as Tat-mediated transactivation of the HIV-1 LTR promoter, by allowing Tat to dissociate from TAR RNA	PubMed
	tat	Acetylation of HIV-1 Tat by P/CAF at Lysine 28 enhances Tat binding to CDK9, indicating P/CAF may regulate Tat-mediated transactivation of the HIV-1 LTR	PubMed
	tat	HIV-1 Tat is acetylated by P/CAF on Lysine 28	PubMed
	tat	Small-molecule inhibitors inbihit PCAF bromodomain/Tat-AcK50 protein-peptide interaction, potentially leads for the anti-HIV/AIDS therapeutic strategy	PubMed
	tat	The K19A, K29R, and K41A mutations decrease HIV-1 Tat binding to PCAF, whereas the K12Q and K12R mutations increase the binding	PubMed
	tat	HIV-1 Tat recruits P/CAF, as well as other known cellular acetyltransferases, to the HIV-1 LTR promoter, an effect involved in the acetylation of histones H3 and H4, and HIV-1 transcriptional activation	PubMed
	tat	HIV-1 Tat interaction with P/CAF and other histone acetyl transferases is preferentially important for Tat-mediated transactivation of integrated, but not unintegrated, HIV-1 LTR promoter	PubMed
	tat	HIV-1 Tat forms a ternary complex with p300 and P/CAF	PubMed
	tat	HIV-1 Tat synergizes with P/CAF to activate the HIV-1 LTR promoter	PubMed
	tat	Association of tumor protein p73 with HIV-1 Tat prevents the acetylation of Tat on lysine 28 by PCAF	PubMed
	tat	Binding of HIV-1 Tat to P/CAF inhibits acetylation of p53 on Lysine320 leading to repression of p53-mediated promoter transactivation, suggesting a mechanism whereby Tat may impair tumor suppressor functions and favor neoplasia establishment during AIDS	PubMed
	tat	The bromodomain (amino acids 712-832) of P/CAF mediates its binding to amino acids 20-40 of non-acetylated HIV-1 Tat, to amino acids 48-57 in the arginine rich motif of Lys50 acetylated Tat, while Lys28 acetylation of Tat abrogates P/CAF binding to Tat	PubMed
	tat	HIV-1 Tat inhibits the transcriptional activation activity of P/CAF	PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

SHGC-84592 (e-PCR)
- UniSTS:102920

SHGC-111194 (e-PCR)
- UniSTS:168209

RH48918 (e-PCR)
- UniSTS:27671

SHGC-82800 (e-PCR)
- UniSTS:102433

RH91328 (e-PCR)
- UniSTS:88956

SHGC-76766 (e-PCR)
- UniSTS:47566

Homology

Homologs of the KAT2B gene: The KAT2B gene is conserved in chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, and frog.
Orthologs from Annotation Pipeline: 444 organisms have orthologs with human gene KAT2B
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables DNA-binding transcription factor binding	IPI Inferred from Physical Interaction more info	PubMed
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables acetyltransferase activity	IDA Inferred from Direct Assay more info	PubMed
enables chromatin binding	ISS Inferred from Sequence or Structural Similarity more info
enables cyclin-dependent protein serine/threonine kinase inhibitor activity	ISS Inferred from Sequence or Structural Similarity more info
enables diamine N-acetyltransferase activity	IEA Inferred from Electronic Annotation more info
enables histone H3 acetyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables histone acetyltransferase activity	EXP Inferred from Experiment more info	PubMed
enables histone acetyltransferase activity	IDA Inferred from Direct Assay more info	PubMed
enables histone acetyltransferase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables histone deacetylase binding	IPI Inferred from Physical Interaction more info	PubMed
enables lysine N-acetyltransferase activity, acting on acetyl phosphate as donor	IDA Inferred from Direct Assay more info	PubMed
enables lysine N-acetyltransferase activity, acting on acetyl phosphate as donor	ISS Inferred from Sequence or Structural Similarity more info
enables peptide-lysine-N-acetyltransferase activity	IDA Inferred from Direct Assay more info	PubMed
enables peptide-lysine-N-acetyltransferase activity	TAS Traceable Author Statement more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein kinase binding	ISS Inferred from Sequence or Structural Similarity more info
enables transcription coactivator activity	IDA Inferred from Direct Assay more info	PubMed
enables transcription coregulator activity	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in N-terminal peptidyl-lysine acetylation	IDA Inferred from Direct Assay more info	PubMed
involved_in cell cycle	IEA Inferred from Electronic Annotation more info
involved_in cellular response to insulin stimulus	IDA Inferred from Direct Assay more info	PubMed
involved_in chromatin remodeling	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in chromatin remodeling	IDA Inferred from Direct Assay more info	PubMed
involved_in chromatin remodeling	NAS Non-traceable Author Statement more info	PubMed
involved_in gluconeogenesis	IEA Inferred from Electronic Annotation more info
involved_in heart development	ISS Inferred from Sequence or Structural Similarity more info
involved_in histone H3 acetylation	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in histone H3 acetylation	IC Inferred by Curator more info	PubMed
involved_in histone H3 acetylation	IDA Inferred from Direct Assay more info	PubMed
involved_in histone H3-K14 acetylation	IC Inferred by Curator more info
involved_in histone H3-K9 acetylation	IEA Inferred from Electronic Annotation more info
involved_in histone acetylation	IC Inferred by Curator more info	PubMed
involved_in internal peptidyl-lysine acetylation	IDA Inferred from Direct Assay more info	PubMed
involved_in limb development	ISS Inferred from Sequence or Structural Similarity more info
involved_in monoubiquitinated histone H2A deubiquitination	IC Inferred by Curator more info
involved_in monoubiquitinated histone deubiquitination	IC Inferred by Curator more info
involved_in negative regulation of cell population proliferation	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of centriole replication	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of rRNA processing	IDA Inferred from Direct Assay more info	PubMed
involved_in peptidyl-lysine acetylation	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of DNA-templated transcription	IC Inferred by Curator more info	PubMed
involved_in positive regulation of attachment of mitotic spindle microtubules to kinetochore	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of gluconeogenesis	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IDA Inferred from Direct Assay more info	PubMed
involved_in protein acetylation	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of DNA repair	IC Inferred by Curator more info	PubMed
involved_in regulation of DNA-templated transcription	IC Inferred by Curator more info	PubMed
involved_in regulation of RNA splicing	IC Inferred by Curator more info	PubMed
involved_in regulation of cell cycle	IC Inferred by Curator more info
involved_in regulation of cell division	IC Inferred by Curator more info
involved_in regulation of embryonic development	IC Inferred by Curator more info
involved_in regulation of histone deacetylation	IC Inferred by Curator more info
involved_in regulation of protein ADP-ribosylation	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IC Inferred by Curator more info
involved_in regulation of tubulin deacetylation	IC Inferred by Curator more info
involved_in rhythmic process	IEA Inferred from Electronic Annotation more info
involved_in transcription initiation-coupled chromatin remodeling	TAS Traceable Author Statement more info

Component	Evidence Code	Pubs
located_in A band	IEA Inferred from Electronic Annotation more info
part_of ATAC complex	IBA Inferred from Biological aspect of Ancestor more info	PubMed
part_of ATAC complex	IC Inferred by Curator more info
part_of ATAC complex	IDA Inferred from Direct Assay more info	PubMed
located_in I band	IEA Inferred from Electronic Annotation more info
part_of SAGA complex	IC Inferred by Curator more info	PubMed
part_of SAGA complex	NAS Non-traceable Author Statement more info	PubMed
located_in actomyosin	IEA Inferred from Electronic Annotation more info
located_in centrosome	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	IDA Inferred from Direct Assay more info
part_of histone acetyltransferase complex	IBA Inferred from Biological aspect of Ancestor more info	PubMed
located_in kinetochore	IEA Inferred from Electronic Annotation more info
located_in mitotic spindle	IC Inferred by Curator more info	PubMed
located_in nucleoplasm	IDA Inferred from Direct Assay more info
located_in nucleoplasm	TAS Traceable Author Statement more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
part_of protein-containing complex	IDA Inferred from Direct Assay more info	PubMed
part_of protein-containing complex	IPI Inferred from Physical Interaction more info	PubMed

General protein information

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Preferred Names: histone acetyltransferase KAT2B

Names: CREBBP-associated factor; K(lysine) acetyltransferase 2B; histone acetylase PCAF; histone acetyltransferase PCAF; p300/CBP-associated factor; spermidine acetyltransferase KAT2B

NP_003875.3

EC 2.3.1.48

EC 2.3.1.57

XP_005265585.1

EC 2.3.1.48

EC 2.3.1.57

XP_047305103.1

EC 2.3.1.48

EC 2.3.1.57

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_003884.5 → NP_003875.3 histone acetyltransferase KAT2B

See identical proteins and their annotated locations for NP_003875.3

Status: REVIEWED

Source sequence(s)

AC099057

Consensus CDS

CCDS2634.1

UniProtKB/Swiss-Prot

Q6NSK1, Q92831

Related

ENSP00000263754.4, ENST00000263754.5

Conserved Domains (3) summary

cd05509
Location:727 → 826

Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...

COG5076
Location:487 → 826

COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]

pfam06466
Location:75 → 325

PCAF_N; PCAF (P300/CBP-associated factor) N-terminal domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000003.12 Reference GRCh38.p14 Primary Assembly

Range

20040446..20154404

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_047449147.1 → XP_047305103.1 histone acetyltransferase KAT2B isoform X2
XM_005265528.5 → XP_005265585.1 histone acetyltransferase KAT2B isoform X1

Conserved Domains (2) summary

pfam00583
Location:550 → 622

Acetyltransf_1; Acetyltransferase (GNAT) family

pfam06466
Location:74 → 325

PCAF_N; PCAF (P300/CBP-associated factor) N-terminal domain