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CCDC142 coiled-coil domain containing 142 [ Homo sapiens (human) ]

Gene ID: 84865, updated on 23-Nov-2021

Summary

Official Symbol
CCDC142provided by HGNC
Official Full Name
coiled-coil domain containing 142provided by HGNC
Primary source
HGNC:HGNC:25889
See related
Ensembl:ENSG00000135637
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.1), duodenum (RPKM 2.1) and 25 other tissues See more
Orthologs
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Genomic context

See CCDC142 in Genome Data Viewer
Location:
2p13.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (74472832..74482998, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (74699959..74710125, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2309 Neighboring gene mitochondrial ribosomal protein L53 Neighboring gene tetratricopeptide repeat domain 31 Neighboring gene ladybird homeobox 2 Neighboring gene Sharpr-MPRA regulatory region 184 Neighboring gene LBX2 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: MRPL53

Homology

Clone Names

  • FLJ14397, FLJ90728

General protein information

Preferred Names
coiled-coil domain-containing protein 142

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365575.2NP_001352504.1  coiled-coil domain-containing protein 142 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC005041, AK027303, AK075543, BC117269, DB036151
    Related
    ENSP00000377537.3, ENST00000393965.8
    Conserved Domains (1) summary
    pfam14923
    Location:308726
    CCDC142; Coiled-coil protein 142
  2. NM_032779.4NP_116168.3  coiled-coil domain-containing protein 142 isoform 2

    See identical proteins and their annotated locations for NP_116168.3

    Status: VALIDATED

    Source sequence(s)
    AC005041, AK075543, BC117269
    Consensus CDS
    CCDS1945.1
    UniProtKB/Swiss-Prot
    Q17RM4
    Related
    ENSP00000290418.4, ENST00000290418.4
    Conserved Domains (1) summary
    pfam14923
    Location:308719
    CCDC142; Coiled-coil protein 142

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    74472832..74482998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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