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POLR2J4 RNA polymerase II subunit J4, pseudogene [ Homo sapiens (human) ]

Gene ID: 84820, updated on 13-May-2022

Summary

Official Symbol
POLR2J4provided by HGNC
Official Full Name
RNA polymerase II subunit J4, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:28195
See related
Ensembl:ENSG00000214783 AllianceGenome:HGNC:28195
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPB11-phi
Expression
Ubiquitous expression in esophagus (RPKM 7.2), thyroid (RPKM 4.8) and 25 other tissues See more
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Genomic context

See POLR2J4 in Genome Data Viewer
Location:
7p13
Exon count:
16
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (43940895..44019194, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (44099196..44177577, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (43980494..44058793, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene URGCP-MRPS24 readthrough Neighboring gene uncharacterized LOC124901620 Neighboring gene upregulator of cell proliferation Neighboring gene tubulin gamma 1 pseudogene Neighboring gene ubiquitin conjugating enzyme E2 D4 (putative) Neighboring gene speedy/RINGO cell cycle regulator family member E1 Neighboring gene Sharpr-MPRA regulatory region 7454 Neighboring gene RAS p21 protein activator 4C, pseudogene Neighboring gene long intergenic non-protein coding RNA 957

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa pseudogene
  • polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene
  • polymerase (RNA) II subunit J4, pseudogene

Clone Names

  • MGC13098

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003655.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004985, BX537878, BX538054, CD674494, DA147922
    Related
    ENST00000427076.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    43940895..44019194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    44099196..44177577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032734.1: Suppressed sequence

    Description
    NM_032734.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.