U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT1G11100 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837651, updated on 15-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
AT1G11100
Gene description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
Primary source
Araport:AT1G11100
Locus tag
AT1G11100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FRG5; SNF2-RING-HELICASE?LIKE 5; T19D16.2; T19D16_2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (3703672..3709586, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene serine carboxypeptidase-like 31 Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene LisH and RanBPM domains containing protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001331954.1
NM_001331955.1
NM_001331956.1
NM_100983.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
NP_001184958.1
  • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1).
NP_172577.2
  • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99; Bacteria - 7103; Metazoa - 5587; Fungi - 5290; Plants - 2119; Viruses - 156; Other Eukaryotes - 3559 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3703672..3709586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198029.1 → NP_001184958.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001184958.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLI9, F4I7D2
    Conserved Domains (4) summary
    smart00184
    Location:962 → 999
    RING; Ring finger
    pfam00176
    Location:544 → 925
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1115 → 1211
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:623 → 686
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_100983.5 → NP_172577.2  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172577.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EDW6, F4I7D3, O04082
    Conserved Domains (4) summary
    smart00184
    Location:919 → 956
    RING; Ring finger
    cd00046
    Location:565 → 751
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:545 → 882
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1072 → 1168
    Helicase_C; Helicase conserved C-terminal domain

  3. NM_001331955.1 → NP_001320184.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DRY0, C0SUU4

  4. NM_001331954.1 → NP_001320182.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM22, A0A7G2DSU9

  5. NM_001331956.1 → NP_001320183.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM17, A0A654EDW6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Tools