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Taxonomy browser (Arabidopsis thaliana)

Arabidopsis thaliana

Taxonomy ID: 3702 (for references in articles please use NCBI:txid3702)
current name
Arabidopsis thaliana (L.) Heynh.
Genbank common name: thale cress
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name(s) mouse-ear cress, thale-cress
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
   Entrez records   
Database name Direct links
Nucleotide 2,699,435
Protein 369,418
Structure 1,527
Genome 1
Popset 1,307
Conserved Domains 52
GEO Datasets 69,030
PubMed Central 67,971
Gene 44,111
HomoloGene 10,445
SRA Experiments 78,082
GEO Profiles 2,014,308
Protein Clusters 19,225
Identical Protein Groups 131,218
Bio Project 5,943
Bio Sample 98,371
Bio Systems 1,028
Assembly 105
Probe 206,829
PubChem BioAssay 173
Taxonomy 1

Comments and References:

FNA - Arabidopsis
Al-Shehbaz IA. 2009. Arabidopsis (de Candolle) Heynhold in F. Holl and G. Heynhold, Fl. Sachsen. 1: 538. 1842. [name conserved]. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.
Flora of China - Brassicaceae
Tai-yien Cheo, Lianli Lu, Guang Yang, Ihsan Al-Shehbaz & Vladimir Dorofeev. 2001. Brassicaceae Burnett. In Wu, Z. Y. & P. H. Raven, eds. Flora of China. Vol. 8 (Brassicaceae through Saxifragaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China:
O'Kane M & Al-Shehbaz IA 1997
O'Kane SL, Jr. and Al-Shehbaz IH. 1997. A synopsis of Arabidopsis (Brassicaceae). Novon 7: 323-327.

Genome Information

Go to NCBI genomic BLAST page for Arabidopsis thaliana

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Arabidopsis thaliana taxonomy taxonomy/phylogenetic Arctos Specimen Database
Arabidopsis thaliana col organism-specific BioCyc
35 records from this provider supplemental materials Dryad Digital Repository
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic Encyclopedia of life
35 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639560100: Arabidopsis thaliana Columbia organism-specific Integrated Microbial Genomes
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic Integrated Taxonomic Information System
2 records from this provider clones/clone libraries Kazusa DNA Research Institute
Arabidopsis thaliana taxonomy/phylogenetic Lifemap
5 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Arabidopsis thaliana taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Arabidopsis thaliana taxonomy/phylogenetic Plants of the World Online
Arabidopsis thaliana taxonomy/phylogenetic The International Plant Names Index
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Arabidopsis thaliana organism-specific WebScipio - eukaryotic gene identification
27 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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