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ZNF232 zinc finger protein 232 [ Homo sapiens (human) ]

Gene ID: 7775, updated on 7-Jun-2020

Summary

Official Symbol
ZNF232provided by HGNC
Official Full Name
zinc finger protein 232provided by HGNC
Primary source
HGNC:HGNC:13026
See related
Ensembl:ENSG00000167840 MIM:616463
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZSCAN11
Expression
Ubiquitous expression in ovary (RPKM 6.2), testis (RPKM 4.2) and 25 other tissues See more
Orthologs

Genomic context

See ZNF232 in Genome Data Viewer
Location:
17p13.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (5105734..5123116, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (5009029..5026411, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene zinc finger with KRAB and SCAN domains 1 pseudogene Neighboring gene ZFP3 zinc finger protein Neighboring gene ZNF232 antisense RNA 1 Neighboring gene ubiquitin specific peptidase 6 Neighboring gene zinc finger protein 594 Neighboring gene uncharacterized LOC100130950 Neighboring gene SLP adaptor and CSK interacting membrane protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
zinc finger protein 232
Names
zinc finger and SCAN domain-containing protein 11

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320952.1NP_001307881.1  zinc finger protein 232 isoform b

    Status: VALIDATED

    Source sequence(s)
    AK225622, BQ184519, BQ641476
    Consensus CDS
    CCDS82043.1
    UniProtKB/TrEMBL
    I3L4J6
    Related
    ENSP00000461305.1, ENST00000575898.5
    Conserved Domains (6) summary
    smart00431
    Location:75188
    SCAN; leucine rich region
    COG5048
    Location:294400
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:324344
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:294316
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:75162
    SCAN; SCAN domain
    pfam13465
    Location:364389
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001320953.1NP_001307882.1  zinc finger protein 232 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: Variants 3 and 4 encode the same isoform (c).
    Source sequence(s)
    AC012146
    UniProtKB/Swiss-Prot
    Q9UNY5
    Conserved Domains (4) summary
    smart00431
    Location:48161
    SCAN; leucine rich region
    COG5048
    Location:302382
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:306326
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:276298
    zf-C2H2; Zinc finger, C2H2 type
  3. NM_001320954.1NP_001307883.1  zinc finger protein 232 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: Variants 3 and 4 encode the same isoform (c).
    Source sequence(s)
    AC012146
    UniProtKB/Swiss-Prot
    Q9UNY5
    Conserved Domains (4) summary
    smart00431
    Location:48161
    SCAN; leucine rich region
    COG5048
    Location:302382
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:306326
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:276298
    zf-C2H2; Zinc finger, C2H2 type
  4. NM_001320955.1NP_001307884.1  zinc finger protein 232 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC012146
    Conserved Domains (5) summary
    COG5048
    Location:301381
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:305325
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:275297
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:75139
    SCAN; SCAN domain
    pfam13465
    Location:345370
    zf-H2C2_2; Zinc-finger double domain
  5. NM_014519.4NP_055334.2  zinc finger protein 232 isoform a

    See identical proteins and their annotated locations for NP_055334.2

    Status: VALIDATED

    Source sequence(s)
    AC012146
    Consensus CDS
    CCDS11068.1
    UniProtKB/Swiss-Prot
    Q9UNY5
    Related
    ENSP00000250076.3, ENST00000250076.7
    Conserved Domains (6) summary
    smart00431
    Location:75188
    SCAN; leucine rich region
    COG5048
    Location:303409
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:333353
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:303325
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:75162
    SCAN; SCAN domain
    pfam13465
    Location:373398
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    5105734..5123116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017025023.2XP_016880512.1  zinc finger protein 232 isoform X5

  2. XM_017025022.2XP_016880511.1  zinc finger protein 232 isoform X4

  3. XM_011524006.3XP_011522308.1  zinc finger protein 232 isoform X3

    See identical proteins and their annotated locations for XP_011522308.1

    Conserved Domains (6) summary
    smart00431
    Location:27140
    SCAN; leucine rich region
    COG5048
    Location:281361
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:285305
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:255277
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:27114
    SCAN; SCAN domain
    pfam13465
    Location:325350
    zf-H2C2_2; Zinc-finger double domain
  4. XM_024450918.1XP_024306686.1  zinc finger protein 232 isoform X2

    Conserved Domains (4) summary
    smart00431
    Location:48161
    SCAN; leucine rich region
    COG5048
    Location:267373
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:297317
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:337362
    zf-H2C2_2; Zinc-finger double domain
  5. XM_024450919.1XP_024306687.1  zinc finger protein 232 isoform X6

    Conserved Domains (1) summary
    cl02605
    Location:27119
    SCAN; SCAN oligomerization domain
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