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ZNF74 zinc finger protein 74 [ Homo sapiens (human) ]

Gene ID: 7625, updated on 11-Jun-2021

Summary

Official Symbol
ZNF74provided by HGNC
Official Full Name
zinc finger protein 74provided by HGNC
Primary source
HGNC:HGNC:13144
See related
Ensembl:ENSG00000185252 MIM:194548
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
COS52; hZNF7; ZFP520; ZNF520
Expression
Ubiquitous expression in ovary (RPKM 2.9), endometrium (RPKM 2.2) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF74 in Genome Data Viewer
Location:
22q11.21
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (20394151..20408455)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (20748441..20762745)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 230 member G Neighboring gene ubiquitin specific peptidase 41 Neighboring gene RNA, U6 small nuclear 225, pseudogene Neighboring gene VISTA enhancer hs1620 Neighboring gene scavenger receptor class F member 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in actin cytoskeleton IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 74
Names
zinc finger protein 520

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256523.2NP_001243452.1  zinc finger protein 74 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' coding region, resulting in a frameshift in the remaining coding region, compared to variant 1. The encoded isoform (b) shares the same N-terminus but is otherwise distinct and shorter, compared to isoform a.
    Source sequence(s)
    AC007731, BC013395, BC013741, BG912037, DA791304
    Consensus CDS
    CCDS58794.1
    UniProtKB/Swiss-Prot
    Q16587
    Related
    ENSP00000384750.3, ENST00000403682.7
  2. NM_001256524.2NP_001243453.1  zinc finger protein 74 isoform a

    See identical proteins and their annotated locations for NP_001243453.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate segment in the 5' UTR, compared to variant 1. Both variants 1 and 3 encode the same isoform (a).
    Source sequence(s)
    AC007731, AK291358, BC013395, BC056902, BG912037, DA791304
    Consensus CDS
    CCDS42982.1
    UniProtKB/Swiss-Prot
    Q16587
    UniProtKB/TrEMBL
    A8K5P3
    Related
    ENSP00000483077.1, ENST00000611540.4
    Conserved Domains (4) summary
    smart00349
    Location:43103
    KRAB; krueppel associated box
    COG5048
    Location:331511
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:306326
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:514539
    zf-H2C2_2; Zinc-finger double domain
  3. NM_001256525.2NP_001243454.1  zinc finger protein 74 isoform c

    See identical proteins and their annotated locations for NP_001243454.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AC007731, BC013395, BC048295, BG912037, DA791304
    UniProtKB/Swiss-Prot
    Q16587
    UniProtKB/TrEMBL
    Q05BG0
    Conserved Domains (4) summary
    smart00349
    Location:132
    KRAB; krueppel associated box
    COG5048
    Location:260440
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:387412
    zf-H2C2_2; Zinc-finger double domain
  4. NM_003426.4NP_003417.2  zinc finger protein 74 isoform a

    See identical proteins and their annotated locations for NP_003417.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a). Both variants 1 and 3 encode isoform a.
    Source sequence(s)
    AC007731, BC013395, BC056902, BG912037, DA791304
    Consensus CDS
    CCDS42982.1
    UniProtKB/Swiss-Prot
    Q16587
    Related
    ENSP00000383301.2, ENST00000400451.7
    Conserved Domains (4) summary
    smart00349
    Location:43103
    KRAB; krueppel associated box
    COG5048
    Location:331511
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:306326
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:514539
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. NR_046282.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) contains an additional exon in the central region, compared to variant 1. This variant is represented as non-coding because the use of the supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AB209663, AC007731, BC013395, BG912037, DA791304
    Related
    ENST00000437275.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    20394151..20408455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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