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ZNF20 zinc finger protein 20 [ Homo sapiens (human) ]

Gene ID: 7568, updated on 23-Nov-2021

Summary

Official Symbol
ZNF20provided by HGNC
Official Full Name
zinc finger protein 20provided by HGNC
Primary source
HGNC:HGNC:12992
See related
Ensembl:ENSG00000132010 MIM:194557
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KOX13
Expression
Broad expression in testis (RPKM 5.4), thyroid (RPKM 2.3) and 24 other tissues See more
Orthologs
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Genomic context

See ZNF20 in Genome Data Viewer
Location:
19p13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (12131350..12140350, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12242165..12251165, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger family member 788, pseudogene Neighboring gene ribosomal L24 domain containing 1 pseudogene 8 Neighboring gene RNA, 5S ribosomal pseudogene 467 Neighboring gene uncharacterized LOC105372275 Neighboring gene ZNF625-ZNF20 readthrough (NMD candidate) Neighboring gene ribosomal protein L17 pseudogene 47 Neighboring gene zinc finger protein 625

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ39241

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger protein 20
Names
zinc finger protein KOX13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001203250.2NP_001190179.1  zinc finger protein 20 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
    Source sequence(s)
    AC022415, BM142273, DB034821
    Conserved Domains (6) summary
    smart00349
    Location:444
    KRAB; krueppel associated box
    COG5048
    Location:112522
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:198218
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:443
    KRAB; KRAB box
    pfam13465
    Location:406431
    zf-H2C2_2; Zinc-finger double domain
  2. NM_021143.4NP_066966.2  zinc finger protein 20 isoform 1

    See identical proteins and their annotated locations for NP_066966.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC022415, BC036714, BM142273, DB057678
    Consensus CDS
    CCDS45986.1
    UniProtKB/Swiss-Prot
    P17024
    Related
    ENSP00000335437.5, ENST00000334213.10
    Conserved Domains (6) summary
    smart00349
    Location:747
    KRAB; krueppel associated box
    COG5048
    Location:115525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:397417
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:201221
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:746
    KRAB; KRAB box
    pfam13465
    Location:409434
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    12131350..12140350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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