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Zfp949 zinc finger protein 949 [ Mus musculus (house mouse) ]

Gene ID: 71640, updated on 16-Oct-2021

Summary

Official Symbol
Zfp949provided by MGI
Official Full Name
zinc finger protein 949provided by MGI
Primary source
MGI:MGI:1918890
See related
Ensembl:ENSMUSG00000032425
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Nczf; 4930422I07Rik
Expression
Ubiquitous expression in cerebellum adult (RPKM 4.6), frontal lobe adult (RPKM 3.8) and 28 other tissues See more
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Genomic context

See Zfp949 in Genome Data Viewer
Location:
9; 9 E3.1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (88430073..88453139)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (88548020..88571086)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (88442858..88465924)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 50B Neighboring gene small nucleolar RNA host gene 5 Neighboring gene predicted gene, 22985 Neighboring gene tripartite motif-containing 43A Neighboring gene predicted gene, 51715 Neighboring gene RIKEN cDNA 9430037G07 gene Neighboring gene transcription elongation factor B polypeptide 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
uncharacterized protein LOC71640

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142943.1NP_001136415.1  uncharacterized protein LOC71640

    See identical proteins and their annotated locations for NP_001136415.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC163666, AK015179, BC141010, BU610496
    Consensus CDS
    CCDS52880.1
    UniProtKB/TrEMBL
    B2RU83, E9Q732, Q9CUP6
    Related
    ENSMUSP00000125325.2, ENSMUST00000162827.8
    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001163061.1NP_001156533.1  uncharacterized protein LOC71640

    See identical proteins and their annotated locations for NP_001156533.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC163666, CT025673
    Consensus CDS
    CCDS52880.1
    UniProtKB/TrEMBL
    E9Q732
    Related
    ENSMUSP00000125017.2, ENSMUST00000161458.3
    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    88430073..88453139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030244606.1XP_030100466.1  uncharacterized protein LOC71640 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_036155290.1XP_036011183.1  uncharacterized protein LOC71640 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. XM_030244605.1XP_030100465.1  uncharacterized protein LOC71640 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. XM_017313596.2XP_017169085.1  uncharacterized protein LOC71640 isoform X1

    UniProtKB/TrEMBL
    E9Q732
    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  5. XM_036155291.1XP_036011184.1  uncharacterized protein LOC71640 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  6. XM_006511446.5XP_006511509.1  uncharacterized protein LOC71640 isoform X1

    See identical proteins and their annotated locations for XP_006511509.1

    UniProtKB/TrEMBL
    E9Q732
    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  7. XM_030244604.2XP_030100464.1  uncharacterized protein LOC71640 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  8. XM_030244607.2XP_030100467.1  uncharacterized protein LOC71640 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:246594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:438458
    ZF_C2H2; C2H2 Zn finger [structural motif]
  9. XM_030244608.2XP_030100468.1  uncharacterized protein LOC71640 isoform X2

    Conserved Domains (3) summary
    smart00349
    Location:238
    KRAB; krueppel associated box
    COG5048
    Location:216564
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:408428
    ZF_C2H2; C2H2 Zn finger [structural motif]
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