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Arl16 ADP-ribosylation factor-like 16 [ Mus musculus (house mouse) ]

Gene ID: 70317, updated on 5-Mar-2024

Summary

Official Symbol
Arl16provided by MGI
Official Full Name
ADP-ribosylation factor-like 16provided by MGI
Primary source
MGI:MGI:1917567
See related
Ensembl:ENSMUSG00000057594 AllianceGenome:MGI:1917567
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2600005N12Rik
Summary
Orthologous to human ARL16 (ADP ribosylation factor like GTPase 16). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 18.4), subcutaneous fat pad adult (RPKM 11.9) and 28 other tissues See more
Orthologs
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Genomic context

See Arl16 in Genome Data Viewer
Location:
11 E2; 11 84.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (120355152..120358426, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (120464326..120467600, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6G, cGMP-specific, rod, gamma Neighboring gene oxidoreductase like domain containing 1 Neighboring gene coiled-coil domain containing 137 Neighboring gene STARR-positive B cell enhancer ABC_E260 Neighboring gene HGF-regulated tyrosine kinase substrate Neighboring gene mitochondrial ribosomal protein L12

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ADP-ribosylation factor-like protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_197995.2NP_932112.2  ADP-ribosylation factor-like protein 16

    See identical proteins and their annotated locations for NP_932112.2

    Status: VALIDATED

    Source sequence(s)
    AK038349, AK140077, BF472168
    Consensus CDS
    CCDS36390.1
    UniProtKB/TrEMBL
    B1ATY8, Q3V3L8
    Related
    ENSMUSP00000076188.7, ENSMUST00000076921.7
    Conserved Domains (1) summary
    cd00878
    Location:1168
    Arf_Arl; ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    120355152..120358426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)