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HSPA13 heat shock protein family A (Hsp70) member 13 [ Homo sapiens (human) ]

Gene ID: 6782, updated on 7-Jun-2020

Summary

Official Symbol
HSPA13provided by HGNC
Official Full Name
heat shock protein family A (Hsp70) member 13provided by HGNC
Primary source
HGNC:HGNC:11375
See related
Ensembl:ENSG00000155304 MIM:601100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
STCH
Summary
The protein encoded by this gene is a member of the heat shock protein 70 family and is found associated with microsomes. Members of this protein family play a role in the processing of cytosolic and secretory proteins, as well as in the removal of denatured or incorrectly-folded proteins. The encoded protein contains an ATPase domain and has been shown to associate with a ubiquitin-like protein. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in brain (RPKM 23.3), thyroid (RPKM 21.7) and 25 other tissues See more
Orthologs

Genomic context

See HSPA13 in Genome Data Viewer
Location:
21q11.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (14371115..14383146, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (15743436..15755509, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 11 Neighboring gene ATP binding cassette subfamily C member 13 (pseudogene) Neighboring gene uncharacterized LOC105369304 Neighboring gene CRISPRi-validated cis-regulatory element chr21.63

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env HIV-1 gp120 is identified to have a physical interaction with heat shock protein 70kDa family, member 13 (HSPA13) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed
Envelope surface glycoprotein gp160, precursor env HIV-1 gp160 interacts with HSPA13; predicted interaction to occur in the endoplasmic reticulum PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
heat shock protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
misfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding involved in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cellular response to unfolded protein IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chaperone cofactor-dependent protein refolding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein refolding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to unfolded protein IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome HDA PubMed 
intracellular membrane-bounded organelle TAS
Traceable Author Statement
more info
PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
heat shock 70 kDa protein 13
Names
heat shock protein 70kDa family, member 13
microsomal stress 70 protein ATPase core
stress 70 protein chaperone, microsome-associated, 60kD
stress 70 protein chaperone, microsome-associated, 60kDa
stress-70 protein chaperone microsome-associated 60 kDa protein
testis secretory sperm-binding protein Li 199a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006948.5NP_008879.3  heat shock 70 kDa protein 13 precursor

    See identical proteins and their annotated locations for NP_008879.3

    Status: REVIEWED

    Source sequence(s)
    AA018751, AA767266, AI912654, BC036370, BE467288, BI548162, CA392315, CF141775, U04735
    Consensus CDS
    CCDS13567.1
    UniProtKB/Swiss-Prot
    P48723
    UniProtKB/TrEMBL
    A0A140VK72
    Related
    ENSP00000285667.3, ENST00000285667.4
    Conserved Domains (2) summary
    cd10237
    Location:12463
    HSPA13-like_NBD; Nucleotide-binding domain of human HSPA13 and similar proteins
    PRK13930
    Location:32442
    PRK13930; rod shape-determining protein MreB; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    14371115..14383146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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