Format

Send to:

Choose Destination

SLC1A5 solute carrier family 1 member 5 [ Homo sapiens (human) ]

Gene ID: 6510, updated on 14-May-2019

Summary

Official Symbol
SLC1A5provided by HGNC
Official Full Name
solute carrier family 1 member 5provided by HGNC
Primary source
HGNC:HGNC:10943
See related
Ensembl:ENSG00000105281 MIM:109190
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
R16; AAAT; ATBO; M7V1; RDRC; ASCT2; M7VS1
Summary
The SLC1A5 gene encodes a sodium-dependent neutral amino acid transporter that can act as a receptor for RD114/type D retrovirus (Larriba et al., 2001 [PubMed 11781704]).[supplied by OMIM, Jan 2011]
Expression
Ubiquitous expression in fat (RPKM 39.0), prostate (RPKM 26.2) and 22 other tissues See more
Orthologs

Genomic context

See SLC1A5 in Genome Data Viewer
Location:
19q13.32
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 19 NC_000019.10 (46759685..46788622, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (47263587..47292280, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene protein kinase D2 Neighboring gene uncharacterized LOC107987269 Neighboring gene striatin 4 Neighboring gene fukutin related protein Neighboring gene heterogeneous nuclear ribonucleoprotein M pseudogene 2 Neighboring gene uncharacterized LOC107985273

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

HIV-1 interactions

Replication interactions

Interaction Pubs
HIV-1 infection (VSV-G pseudotyped) of CEMT4 T cells downregulates plasma membrane expression of SLC1A5 PubMed

Protein interactions

Protein Gene Interaction Pubs
Pr55(Gag) gag Cellular biotinylated solute carrier family 1 (neutral amino acid transporter), member 5 (SLC1A5) protein is incorporated into HIV-1 Gag virus-like particles PubMed

Go to the HIV-1, Human Interaction Database

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ31068

Gene Ontology Provided by GOA

Function Evidence Code Pubs
L-glutamine transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
L-glutamine transmembrane transporter activity TAS
Traceable Author Statement
more info
PubMed 
L-serine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
amino acid transmembrane transporter activity TAS
Traceable Author Statement
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
neutral amino acid transmembrane transporter activity TAS
Traceable Author Statement
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
signaling receptor activity TAS
Traceable Author Statement
more info
PubMed 
symporter activity IEA
Inferred from Electronic Annotation
more info
 
virus receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
L-glutamine import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 
L-serine transport IEA
Inferred from Electronic Annotation
more info
 
amino acid transport TAS
Traceable Author Statement
more info
 
glutamine secretion IEA
Inferred from Electronic Annotation
more info
 
glutamine transport IDA
Inferred from Direct Assay
more info
PubMed 
glutamine transport TAS
Traceable Author Statement
more info
PubMed 
neutral amino acid transport TAS
Traceable Author Statement
more info
PubMed 
protein homotrimerization IDA
Inferred from Direct Assay
more info
PubMed 
viral entry into host cell IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular exosome HDA PubMed 
integral component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
integral component of plasma membrane TAS
Traceable Author Statement
more info
PubMed 
melanosome IEA
Inferred from Electronic Annotation
more info
 
membrane HDA PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
neutral amino acid transporter B(0)
Names
ATB(0)
RD114 virus receptor
RD114/simian type D retrovirus receptor
baboon M7 virus receptor
neutral amino acid transporter B
sodium-dependent neutral amino acid transporter type 2
solute carrier family 1 (neutral amino acid transporter), member 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145144.1NP_001138616.1  neutral amino acid transporter B(0) isoform 2

    See identical proteins and their annotated locations for NP_001138616.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC008622, AK301661
    Consensus CDS
    CCDS46126.1
    UniProtKB/Swiss-Prot
    Q15758
    Related
    ENSP00000397924.1, ENST00000412532.6
    Conserved Domains (1) summary
    pfam00375
    Location:2254
    SDF; Sodium:dicarboxylate symporter family
  2. NM_001145145.1NP_001138617.1  neutral amino acid transporter B(0) isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC008622, AK299137, DA031076
    Consensus CDS
    CCDS46125.1
    UniProtKB/Swiss-Prot
    Q15758
    Related
    ENSP00000406532.1, ENST00000434726.6
    Conserved Domains (1) summary
    pfam00375
    Location:28280
    SDF; Sodium:dicarboxylate symporter family
  3. NM_005628.3NP_005619.1  neutral amino acid transporter B(0) isoform 1

    See identical proteins and their annotated locations for NP_005619.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AB209738, AC008622, AK301661, U53347
    Consensus CDS
    CCDS12692.1
    UniProtKB/Swiss-Prot
    Q15758
    UniProtKB/TrEMBL
    Q59ES3
    Related
    ENSP00000444408.1, ENST00000542575.6
    Conserved Domains (1) summary
    pfam00375
    Location:106482
    SDF; Sodium:dicarboxylate symporter family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p12 Primary Assembly

    Range
    46759685..46788622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005259167.4XP_005259224.1  neutral amino acid transporter B(0) isoform X1

    Conserved Domains (1) summary
    pfam00375
    Location:106468
    SDF; Sodium:dicarboxylate symporter family
Support Center