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RNF225 ring finger protein 225 [ Homo sapiens (human) ]

Gene ID: 646862, updated on 20-Oct-2020

Summary

Official Symbol
RNF225provided by HGNC
Official Full Name
ring finger protein 225provided by HGNC
Primary source
HGNC:HGNC:51249
See related
Ensembl:ENSG00000269855
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in esophagus (RPKM 7.7), skin (RPKM 4.9) and 1 other tissue See more
Orthologs

Genomic context

See RNF225 in Genome Data Viewer
Location:
19q13.43
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (58396090..58397079)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (58907457..58908446)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 7872 Neighboring gene ribosomal protein S5 Neighboring gene microRNA 10394 Neighboring gene long intergenic non-protein coding RNA 2560 Neighboring gene zinc finger protein 584

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195135.2NP_001182064.1  RING finger protein 225

    See identical proteins and their annotated locations for NP_001182064.1

    Status: VALIDATED

    Source sequence(s)
    AC012313
    Consensus CDS
    CCDS74477.1
    UniProtKB/Swiss-Prot
    M0QZC1
    Related
    ENSP00000470441.2, ENST00000601382.2
    Conserved Domains (1) summary
    cd00162
    Location:63115
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    58396090..58397079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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