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Muc3a mucin 3A, cell surface associated [ Mus musculus (house mouse) ]

Gene ID: 619309, updated on 30-Apr-2024

Summary

Official Symbol
Muc3aprovided by MGI
Official Full Name
mucin 3A, cell surface associatedprovided by MGI
Primary source
MGI:MGI:3588263
See related
AllianceGenome:MGI:3588263
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A630081J09Rik
Summary
Orthologous to human MUC3A (mucin 3A, cell surface associated). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: suggests misassembly
Orthologs
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Genomic context

See Muc3a in Genome Data Viewer
Location:
5 G2; 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137243263..137276564, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137208805..137212545, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40348 Neighboring gene predicted gene, 31160 Neighboring gene peptidyl-prolyl cis-trans isomerase G-like Neighboring gene predicted gene 42456 Neighboring gene acetylcholinesterase Neighboring gene microRNA 8116

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in cell projection morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    137243263..137276564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165656.1XP_036021549.1  mucin-3A isoform X3

    Conserved Domains (3) summary
    COG3889
    Location:144261
    COG3889; Predicted periplasmic protein [Function unknown]
    cd00055
    Location:261293
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01390
    Location:337419
    SEA; SEA domain
  2. XM_036165655.1XP_036021548.1  mucin-3A isoform X2

    Conserved Domains (2) summary
    COG3889
    Location:24422559
    COG3889; Predicted periplasmic protein [Function unknown]
    cd00055
    Location:25592591
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
  3. XM_036165654.1XP_036021547.1  mucin-3A isoform X1

    Conserved Domains (4) summary
    PLN02217
    Location:16421749
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:24422559
    COG3889; Predicted periplasmic protein [Function unknown]
    cd00055
    Location:25592591
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01390
    Location:26352717
    SEA; SEA domain
  4. XM_036165657.1XP_036021550.1  mucin-3A isoform X4

    Conserved Domains (1) summary
    pfam01390
    Location:890
    SEA; SEA domain
  5. XM_036165658.1XP_036021551.1  mucin-3A isoform X5

RNA

  1. XR_004942657.1 RNA Sequence