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FAM171A2 family with sequence similarity 171 member A2 [ Canis lupus familiaris (dog) ]

Gene ID: 612752, updated on 5-Mar-2024

Summary

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Official Symbol
FAM171A2provided by VGNC
Official Full Name
family with sequence similarity 171 member A2provided by VGNC
Primary source
VGNC:VGNC:40623
See related
Ensembl:ENSCAFG00845008184
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (19761577..19771184)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (18456954..18466557)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (18942624..18952232)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (18615393..18624991)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (18798362..18807965)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene G-patch domain containing 8 Neighboring gene integrin subunit alpha 2b Neighboring gene uncharacterized LOC119873264 Neighboring gene granulin precursor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein FAM171A2; protein FAM171A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    19761577..19771184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676257.1 → XP_038532185.1  protein FAM171A2

    UniProtKB/TrEMBL
    A0A8C0SQ85, A0A8I3MYK3
    Related
    ENSCAFP00845011142.1, ENSCAFT00845014389.1
    Conserved Domains (1) summary
    pfam10577
    Location:41 → 830
    UPF0560; Uncharacterized protein family UPF0560

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    18615393..18624991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485337.1 → XP_038341265.1  LOW QUALITY PROTEIN: protein FAM171A2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    18798362..18807965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611072.1 → XP_038467000.1  LOW QUALITY PROTEIN: protein FAM171A2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    18942624..18952232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547104.1 → XP_038403032.1  protein FAM171A2

    UniProtKB/TrEMBL
    A0A8C0KDA5, A0A8C0SQ85, A0A8P0NFS7
    Conserved Domains (1) summary
    pfam10577
    Location:41 → 830
    UPF0560; Uncharacterized protein family UPF0560

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    18456954..18466557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_843553.7 → XP_848646.4  protein FAM171A2

    UniProtKB/TrEMBL
    A0A8C0KDA5, A0A8C0SQ85, A0A8P0NFS7
    Conserved Domains (1) summary
    pfam10577
    Location:41 → 830
    UPF0560; Uncharacterized protein family UPF0560
Nucleotide Protein
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