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FASTKD5 FAST kinase domains 5 [ Homo sapiens (human) ]

Gene ID: 60493, updated on 12-Oct-2019

Summary

Official Symbol
FASTKD5provided by HGNC
Official Full Name
FAST kinase domains 5provided by HGNC
Primary source
HGNC:HGNC:25790
See related
Ensembl:ENSG00000215251 MIM:614272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ1187M17.5
Expression
Ubiquitous expression in bone marrow (RPKM 15.0), adrenal (RPKM 8.0) and 25 other tissues See more
Orthologs

Genomic context

See FASTKD5 in Genome Data Viewer
Location:
20p13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (3146519..3159865, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (3127165..3140532, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene arginine vasopressin Neighboring gene RNA, 7SL, cytoplasmic 555, pseudogene Neighboring gene UBOX5 antisense RNA 1 Neighboring gene U-box domain containing 5 Neighboring gene leucine zipper tumor suppressor family member 3 Neighboring gene uncharacterized LOC107985414

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13149, FLJ58294

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
rRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mitochondrial RNA processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrial nucleoid IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
ribonucleoprotein granule IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
FAST kinase domain-containing protein 5, mitochondrial

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021826.5NP_068598.1  FAST kinase domain-containing protein 5, mitochondrial

    See identical proteins and their annotated locations for NP_068598.1

    Status: VALIDATED

    Source sequence(s)
    AW182833, BC007413, BC011856
    Consensus CDS
    CCDS13048.1
    UniProtKB/Swiss-Prot
    Q7L8L6
    Related
    ENSP00000369618.3, ENST00000380266.4
    Conserved Domains (3) summary
    smart00952
    Location:699758
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:431499
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:514601
    FAST_2; FAST kinase-like protein, subdomain 2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    3146519..3159865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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