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TMEM167B transmembrane protein 167B [ Homo sapiens (human) ]

Gene ID: 56900, updated on 7-Jun-2020

Summary

Official Symbol
TMEM167Bprovided by HGNC
Official Full Name
transmembrane protein 167Bprovided by HGNC
Primary source
HGNC:HGNC:30187
See related
Ensembl:ENSG00000215717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AD-020; C1orf119
Expression
Ubiquitous expression in thyroid (RPKM 27.7), prostate (RPKM 22.2) and 25 other tissues See more
Orthologs

Genomic context

See TMEM167B in Genome Data Viewer
Location:
1p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (109090764..109096934)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (109633403..109639554)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 13 Neighboring gene TMEM167B divergent transcript Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 pseudogene 1 Neighboring gene small Cajal body-specific RNA 2 Neighboring gene poly(rC) binding protein 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ90710

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
constitutive secretory pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein kish-B
Names
protein x 013

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001322248.2NP_001309177.1  protein kish-B isoform 2

    Status: VALIDATED

    Source sequence(s)
    BC008739, BC067116, BG724370, BP240791
    UniProtKB/Swiss-Prot
    Q9NRX6
    Related
    ENSP00000498719.1, ENST00000651489.1
    Conserved Domains (1) summary
    pfam06842
    Location:1146
    DUF1242; Protein of unknown function (DUF1242)
  2. NM_020141.4NP_064526.1  protein kish-B isoform 1 precursor

    See identical proteins and their annotated locations for NP_064526.1

    Status: VALIDATED

    Source sequence(s)
    AL356488, BC008739
    Consensus CDS
    CCDS30789.1
    UniProtKB/Swiss-Prot
    Q9NRX6
    UniProtKB/TrEMBL
    A0A024R096
    Related
    ENSP00000342148.7, ENST00000338272.9
    Conserved Domains (1) summary
    pfam06842
    Location:1146
    DUF1242; Protein of unknown function (DUF1242)

RNA

  1. NR_136242.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC008739, BC067116, BG724370, BX331284
  2. NR_136243.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC008739, BC067116, BG724370, DA782106

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    109090764..109096934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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