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Tmem167b transmembrane protein 167B [ Mus musculus (house mouse) ]

Gene ID: 67495, updated on 8-Feb-2024

Summary

Official Symbol
Tmem167bprovided by MGI
Official Full Name
transmembrane protein 167Bprovided by MGI
Primary source
MGI:MGI:1914745
See related
Ensembl:ENSMUSG00000068732 AllianceGenome:MGI:1914745
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2010200O16Rik
Summary
Predicted to be involved in constitutive secretory pathway. Predicted to be located in Golgi apparatus. Orthologous to human TMEM167B (transmembrane protein 167B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 7.1), CNS E11.5 (RPKM 7.0) and 28 other tissues See more
Orthologs
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Genomic context

See Tmem167b in Genome Data Viewer
Location:
3 F3; 3 47.31 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108463741..108469782, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108556425..108562466, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4574 Neighboring gene cilia and flagella associated protein 276 Neighboring gene STARR-positive B cell enhancer ABC_E2679 Neighboring gene small Cajal body-specific RNA 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:108365309-108365496 Neighboring gene STARR-positive B cell enhancer ABC_E3459 Neighboring gene STARR-positive B cell enhancer ABC_E1629 Neighboring gene TATA-box binding protein associated factor 13 Neighboring gene STARR-positive B cell enhancer ABC_E6105 Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in constitutive secretory pathway ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026198.2NP_080474.2  protein kish-B precursor

    See identical proteins and their annotated locations for NP_080474.2

    Status: VALIDATED

    Source sequence(s)
    AK008415, AL683823, BQ560740
    Consensus CDS
    CCDS38601.1
    UniProtKB/Swiss-Prot
    Q3U299, Q80X45, Q8BL15, Q9D863
    Related
    ENSMUSP00000088035.6, ENSMUST00000090546.6
    Conserved Domains (1) summary
    pfam06842
    Location:1146
    DUF1242; Protein of unknown function (DUF1242)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    108463741..108469782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)