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C8orf44 chromosome 8 open reading frame 44 [ Homo sapiens (human) ]

Gene ID: 56260, updated on 5-Jan-2022

Summary

Official Symbol
C8orf44provided by HGNC
Official Full Name
chromosome 8 open reading frame 44provided by HGNC
Primary source
HGNC:HGNC:25646
See related
Ensembl:ENSG00000288596
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Located in nucleoplasm. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in brain (RPKM 1.9), testis (RPKM 1.9) and 25 other tissues See more
Orthologs
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Genomic context

See C8orf44 in Genome Data Viewer
Location:
8q13.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (66667596..66681531)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67579831..67593766)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375884 Neighboring gene valosin containing protein interacting protein 1 Neighboring gene C8orf44-SGK3 readthrough Neighboring gene serum/glucocorticoid regulated kinase family member 3 Neighboring gene pituitary tumor-transforming 3, pseudogene Neighboring gene minichromosome maintenance domain containing 2 Neighboring gene small nucleolar RNA, C/D box 87 Neighboring gene small nucleolar RNA host gene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Readthrough C8orf44-SGK3

Readthrough gene: C8orf44-SGK3, Included gene: SGK3

Homology

Clone Names

  • FLJ11267

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_161216.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC090154
    Related
    ENST00000661636.1
  2. NR_161217.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090154
  3. NR_161218.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090154
    Related
    ENST00000521889.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    66667596..66681531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_019607.2: Suppressed sequence

    Description
    NM_019607.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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