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ZNF839 zinc finger protein 839 [ Homo sapiens (human) ]

Gene ID: 55778, updated on 11-Jun-2021

Summary

Official Symbol
ZNF839provided by HGNC
Official Full Name
zinc finger protein 839provided by HGNC
Primary source
HGNC:HGNC:20345
See related
Ensembl:ENSG00000022976
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf131
Expression
Ubiquitous expression in testis (RPKM 6.0), spleen (RPKM 2.7) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF839 in Genome Data Viewer
Location:
14q32.31
Exon count:
16
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (102317506..102342614)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (102783843..102808704)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene WD repeat domain 20 Neighboring gene MOK protein kinase Neighboring gene tRNA-Ile (anticodon AAT) 5-4 Neighboring gene cyclin dependent kinase 2 interacting protein Neighboring gene tectonin beta-propeller repeat containing 2 Neighboring gene RNA, U6 small nuclear 244, pseudogene Neighboring gene ankyrin repeat domain 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ11132, FLJ33514

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger protein 839
Names
renal carcinoma antigen NY-REN-50

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267827.2NP_001254756.1  zinc finger protein 839 isoform 2

    See identical proteins and their annotated locations for NP_001254756.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks an exon in the 5' coding region compared to variant 1, which results in the use of a downstream translation start codon. The resulting protein (isoform 2) has a shorter N-terminus compared to isoform 1. Variants 2 and 3 both encode the same isoform (2).
    Source sequence(s)
    AL137229, AL352978
    Consensus CDS
    CCDS58336.1
    UniProtKB/Swiss-Prot
    A8K0R7
    Related
    ENSP00000453363.1, ENST00000558850.5
    Conserved Domains (1) summary
    pfam15961
    Location:7804
    DUF4764; Domain of unknown function (DUF4764)
  2. NM_001267828.2NP_001254757.1  zinc finger protein 839 isoform 2

    See identical proteins and their annotated locations for NP_001254757.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and lacks an exon in the 5' coding region compared to variant 1, which results in the use of a downstream translation start codon. The resulting protein (isoform 2) has a shorter N-terminus compared to isoform 1. Variants 2 and 3 both encode the same isoform (2).
    Source sequence(s)
    AL137229, AL352978
    Consensus CDS
    CCDS58336.1
    UniProtKB/Swiss-Prot
    A8K0R7
    Related
    ENSP00000453109.1, ENST00000559185.5
    Conserved Domains (1) summary
    pfam15961
    Location:7804
    DUF4764; Domain of unknown function (DUF4764)
  3. NM_001385065.1NP_001371994.1  zinc finger protein 839 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:123870
    DUF4764; Domain of unknown function (DUF4764)
  4. NM_001385069.1NP_001371998.1  zinc finger protein 839 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:7799
    DUF4764; Domain of unknown function (DUF4764)
  5. NM_001385070.1NP_001371999.1  zinc finger protein 839 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:7754
    DUF4764; Domain of unknown function (DUF4764)
  6. NM_001385071.1NP_001372000.1  zinc finger protein 839 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:7729
    DUF4764; Domain of unknown function (DUF4764)
  7. NM_001385072.1NP_001372001.1  zinc finger protein 839 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:123643
    DUF4764; Domain of unknown function (DUF4764)
  8. NM_001385073.1NP_001372002.1  zinc finger protein 839 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:123593
    DUF4764; Domain of unknown function (DUF4764)
  9. NM_001385074.1NP_001372003.1  zinc finger protein 839 isoform 9

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10), as well as variants 11 and 12, encodes isoform 9.
    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:7527
    DUF4764; Domain of unknown function (DUF4764)
  10. NM_001385075.1NP_001372004.1  zinc finger protein 839 isoform 9

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11), as well as variants 10 and 12, encodes isoform 9.
    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:7527
    DUF4764; Domain of unknown function (DUF4764)
  11. NM_001385076.1NP_001372005.1  zinc finger protein 839 isoform 9

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12), as well as variants 10 and 11, encodes isoform 9.
    Source sequence(s)
    AL137229, AL352978
    Conserved Domains (1) summary
    pfam15961
    Location:7527
    DUF4764; Domain of unknown function (DUF4764)
  12. NM_018335.6NP_060805.3  zinc finger protein 839 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AL137229, AL352978
    Consensus CDS
    CCDS45164.1
    UniProtKB/Swiss-Prot
    A8K0R7
    Related
    ENSP00000399863.2, ENST00000442396.7
    Conserved Domains (1) summary
    pfam15961
    Location:123920
    DUF4764; Domain of unknown function (DUF4764)

RNA

  1. NR_169565.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
  2. NR_169566.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
  3. NR_169567.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
  4. NR_169568.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
  5. NR_169569.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137229, AL352978
    Related
    ENST00000559098.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    102317506..102342614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011536945.1XP_011535247.1  zinc finger protein 839 isoform X1

    Conserved Domains (1) summary
    pfam15961
    Location:157954
    DUF4764; Domain of unknown function (DUF4764)
  2. XM_011536949.3XP_011535251.1  zinc finger protein 839 isoform X6

    Conserved Domains (1) summary
    pfam15961
    Location:157694
    DUF4764; Domain of unknown function (DUF4764)
  3. XM_011536946.3XP_011535248.1  zinc finger protein 839 isoform X2

    Conserved Domains (1) summary
    pfam15961
    Location:157904
    DUF4764; Domain of unknown function (DUF4764)
  4. XM_011536950.3XP_011535252.1  zinc finger protein 839 isoform X8

    Conserved Domains (1) summary
    pfam15961
    Location:157644
    DUF4764; Domain of unknown function (DUF4764)
  5. XM_017021450.1XP_016876939.1  zinc finger protein 839 isoform X10

  6. XM_011536948.2XP_011535250.1  zinc finger protein 839 isoform X5

    See identical proteins and their annotated locations for XP_011535250.1

    UniProtKB/Swiss-Prot
    A8K0R7
    Conserved Domains (1) summary
    pfam15961
    Location:7804
    DUF4764; Domain of unknown function (DUF4764)
  7. XM_006720203.3XP_006720266.2  zinc finger protein 839 isoform X4

  8. XM_017021449.2XP_016876938.1  zinc finger protein 839 isoform X9

    Related
    ENSP00000453415.1, ENST00000559155.5
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