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Zfp839 zinc finger protein 839 [ Mus musculus (house mouse) ]

Gene ID: 72805, updated on 26-Sep-2022

Summary

Official Symbol
Zfp839provided by MGI
Official Full Name
zinc finger protein 839provided by MGI
Primary source
MGI:MGI:1920055
See related
Ensembl:ENSMUSG00000021271 AllianceGenome:MGI:1920055
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810455K09Rik
Summary
Orthologous to human ZNF839 (zinc finger protein 839). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 3.5), adrenal adult (RPKM 3.4) and 28 other tissues See more
Orthologs
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Genomic context

See Zfp839 in Genome Data Viewer
Location:
12; 12 F1
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (110816686..110838346)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110850251..110870006)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4921507G05 gene Neighboring gene nuclear encoded tRNA isoleucine 6 (anticodon AAT) Neighboring gene mitochondrial pyruvate carrier 1, pseudogene Neighboring gene cyclin-dependent kinase 2 interacting protein Neighboring gene tectonin beta-propeller repeat containing 2 Neighboring gene ribosomal protein S19, pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199785.1NP_001186714.1  zinc finger protein 839 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon, compared to variant 1, which results in a shorter isoform (2), compared to isoform 1.
    Source sequence(s)
    AC101875, AK013356, BC150732, BX638090
    UniProtKB/TrEMBL
    B2RWW3, Q9CSB3
    Related
    ENSMUSP00000152386.2, ENSMUST00000222460.2
    Conserved Domains (1) summary
    pfam15961
    Location:108818
    DUF4764; Domain of unknown function (DUF4764)
  2. NM_028365.2NP_082641.1  zinc finger protein 839 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC101875, AK013356, BC150732, BX638090
    Consensus CDS
    CCDS49177.1
    UniProtKB/TrEMBL
    B2RWW3, E9PUU5, Q9CSB3
    Related
    ENSMUSP00000131841.3, ENSMUST00000170060.4
    Conserved Domains (1) summary
    pfam15961
    Location:108894
    DUF4764; Domain of unknown function (DUF4764)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    110816686..110838346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516272.4XP_006516335.1  zinc finger protein 839 isoform X1

    Conserved Domains (1) summary
    pfam15961
    Location:108851
    DUF4764; Domain of unknown function (DUF4764)

RNA

  1. XR_001780491.3 RNA Sequence

  2. XR_004937549.1 RNA Sequence