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ANKRD40CL ANKRD40 C-terminal like [ Homo sapiens (human) ]

Gene ID: 55018, updated on 25-Jan-2022

Summary

Official Symbol
ANKRD40CLprovided by HGNC
Official Full Name
ANKRD40 C-terminal likeprovided by HGNC
Primary source
HGNC:HGNC:26080
See related
Ensembl:ENSG00000167117 AllianceGenome:HGNC:26080
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C17orf73; LINC00483
Expression
Biased expression in small intestine (RPKM 28.5), duodenum (RPKM 28.1) and 1 other tissue See more
Orthologs
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Genomic context

See ANKRD40CL in Genome Data Viewer
Location:
17q21.33
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (50761030..50767577, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (48838391..48844879, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 40 Neighboring gene LUC7 like 3 pre-mRNA splicing factor Neighboring gene microRNA 8059 Neighboring gene WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ20694

General protein information

Preferred Names
putative ANKRD40 C-terminal-like protein
Names
long intergenic non-protein coding RNA 483

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358683.3NP_001345612.1  putative ANKRD40 C-terminal-like protein

    Status: VALIDATED

    Source sequence(s)
    AC005921, AK000701, AK310037, BP382918
    Consensus CDS
    CCDS86616.1
    Related
    ENSP00000494384.1, ENST00000450727.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    50761030..50767577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024450820.1XP_024306588.1  putative ANKRD40 C-terminal-like protein isoform X2

  2. XM_024450818.1XP_024306586.1  putative ANKRD40 C-terminal-like protein isoform X1

  3. XM_024450817.1XP_024306585.1  putative ANKRD40 C-terminal-like protein isoform X1

  4. XM_024450816.1XP_024306584.1  putative ANKRD40 C-terminal-like protein isoform X1

  5. XM_024450819.1XP_024306587.1  putative ANKRD40 C-terminal-like protein isoform X1

RNA

  1. XR_002958043.1 RNA Sequence

  2. XR_002958044.1 RNA Sequence

  3. XR_002958045.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_017928.1: Suppressed sequence

    Description
    NM_017928.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NR_024626.1: Suppressed sequence

    Description
    NR_024626.1: This RefSeq was removed because there is insufficient support for the transcript.
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