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Ankrd40cl ANKRD40 C-terminal like [ Mus musculus (house mouse) ]

Gene ID: 102639132, updated on 10-Mar-2024

Summary

Official Symbol
Ankrd40clprovided by MGI
Official Full Name
ANKRD40 C-terminal likeprovided by MGI
Primary source
MGI:MGI:5434049
See related
Ensembl:ENSMUSG00000094091 AllianceGenome:MGI:5434049
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm21885
Summary
Orthologous to human ANKRD40CL (ANKRD40 C-terminal like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 6.5), colon adult (RPKM 2.3) and 10 other tissues See more
Orthologs
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Genomic context

See Ankrd40cl in Genome Data Viewer
Location:
11 D; 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94172665..94177086)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94281839..94286260)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_30462 Neighboring gene STARR-seq mESC enhancer starr_30463 Neighboring gene STARR-positive B cell enhancer ABC_E11487 Neighboring gene predicted gene, 38956 Neighboring gene LUC7-like 3 (S. cerevisiae) Neighboring gene STARR-positive B cell enhancer ABC_E5270 Neighboring gene STARR-positive B cell enhancer ABC_E7046 Neighboring gene ankyrin repeat domain 40

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
putative ANKRD40 C-terminal-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378258.1NP_001365187.1  putative ANKRD40 C-terminal-like protein

    Status: VALIDATED

    Source sequence(s)
    AL645846
    UniProtKB/TrEMBL
    A0A286YDN8
    Related
    ENSMUSP00000153501.2, ENSMUST00000208510.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    94172665..94177086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)